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This wiki hosts general, public information about the [http://gersteinlab.org '''Gerstein Lab'''], beyond that on the homepage. Lab members should consult the [http://wiki.gersteinlab.org/labinfo/ private lab wiki] for lab-specific information (login as user "public"). There's also a wiki for [http://wiki.gersteinlab.org/meetings lab meetings] (login as user "private"). To edit this wiki, contact the [[User:Infoadmin | Infoadmin]]
== Important Public Items ==
*Gerstein Lab '''[https://www.youtube.com/channel/UCVM3Kd2UWdJrAfQ1RqyajHw Youtube]''' , '''[https://twitter.com/GersteinLab Twitter/X]''' and '''[https://bsky.app/profile/gersteinlab.bsky.social Bluesky]'''
*'''[[FAQ]]''' on tools and data
*'''Lab [https://www.gersteinlab.org/calendar/ Calendar]'''
*[http://www.gersteinlab.org/media/images '''Gallery of Homepage Images'''] (Also, [[Homepage image gallery |info. on these images]] & [http://www.gersteinlab.org/index.html.1jun11 old version] of homepage )
*[https://sites.gersteinlab.org/permissions '''Permissions'''] on using material generated by the lab
 
__TOC__
 
In general, this wiki hosts general, public information about the [http://gersteinlab.org '''Gerstein Lab'''], beyond that on the homepage. Lab members should consult the [https://privatewiki.gersteinlab.org/ private lab wiki] for lab-specific information (login as user "public"). To edit this wiki, contact the [[User:Infoadmin | Infoadmin]]
 
<HR>


== Important Public Items ==
== Other Stuff for the Public ==
*Public [[Documents]] about the lab
*Info on [[Bioinformatics Lab Information System (BLIS)]] (utilizing Google Docs API)
*[[FAQ]] (new) on programs
*[[Summaries]] of lab research
*Lab [[Calendar]]
*[[Posters]] showing lab research
*Homepage Info.  
*Misc. Public [[Documents]] about the lab
**[http://www.gersteinlab.org/index.html.1jun11 Old version] of lab homepage
*Public posts of links and useful info to the lab are at [http://linkstream.gersteinlab.org LinkStream.gersteinlab.org] (more info. about the [[Linkstream]], [http://linkstream.gersteinlab.org/tag/seminars Just seminars])
**[[Homepage image gallery]] info. (including [http://archive.gersteinlab.org/images/images list of all images])
*[[Permissions]]
*Prominent [[public wiki pages linked from elsewhere]]
*[[Status of Lab Web Resources]]
*[[Status of Lab Web Resources]]
*Info on [[Lab Archival System]] (that utilizes Google Docs API)
*Vectorized Yale logo, download [http://archive.gersteinlab.org/docs/2015/05.19/Yale_logo.eps here]
*Info on grabbing Google Docs information with a Python


== Info for New People ==
== Info for New People ==
*[[General Information for New Undergraduates]] thinking about working in the lab
* Please follow the steps of [http://info.gersteinlab.org/Onboarding Onboarding] to apply and fill in the new members’ entry process.
* [http://wiki.gersteinlab.org/labinfo/New_People_Entering_Lab Information] for <B>new people</B> starting in the lab from the private wiki
* [[Glossary]] of terms.
* [http://wiki.gersteinlab.org/labinfo/Staff People] to look for to get oriented
* Initialed people should have access to [http://bit.ly/mglab-folder Google Drive]
* About [http://wiki.gersteinlab.org/labinfo/Group_Meeting_and_JC_Procedure Group Meetings and JClubs]
 
== Info for Lab Signature ==
*For all lab signatures this the procedure: ask LI & CC. MG will reply w/ an email say "sign0mg" LI will sign.


== Info for Lab Members and Collaborators ==
== Info for Lab Members and Collaborators ==
*[http://wiki.gersteinlab.org/labinfo/Lab_Computing_Resources Lab Computing Resources] page.
* Working on drafts, papers, grants, presentations &c
*[http://wiki.gersteinlab.org/labinfo/Making_conference_calls_or_lab_related_calls Making phone calls] (SKYPE information included) page.
** Lab [[Resources Document]] (NIH form)
*[http://wiki.gersteinlab.org/labinfo/Using_copier Using copier] page.
** Conventions for editing Google Docs - http://goo.gl/kSrS9
*[http://www.facebook.com/group.php?gid=54856837624 Gerstein Lab Facebook Page]
** Pointers on [[Streamlining Draft Flow]] (Ideas related to the process of drafting and submitting papers)
*[http://bioinfo.mbb.yale.edu/pipermail/web/ Public WEB Mailing List] (no longer in use)
*** Contains a proof stage [http://info.gersteinlab.org/Proofsx57m checklist] ('''Proofsx57m''')
* [[Streamlining Draft Flow]] (Ideas for streamlining the process of drafting and submitting papers)
** [[Pointers on Powerpoints]] and [[Pointers on Grant Sections]]
** Way to list Mark's [[Affiliation]] on papers
** [[CRAMTOOLS and common directory]]
** See [[xxmg at gersteinlab.org | xxmg@gersteinlab.org]] for correct address to use for paper correspondence.
 
** Note that '''xxmg at bioinfo.mbb.yale.edu''' for paper correspondence is deprecated.  
* Computing
* [[Pointers on Powerpoints]] and [[Pointers on Grant Sections]]
** [http://wiki.gersteinlab.org/labinfo/Lab_Computing_Resources Lab Computing Resources] page.  
* [[Recommendation Letters]]
** [[Gerstein Lab Computing in HPC]]
* Lab [[Resources Document]] (NIH form)
** [[Gerstein Lab Computing in GersteinLab West Campus]]
* Google Groups: [http://group.gersteinlab.org homepage], for [http://docs.google.com/a/gersteinlab.org DOCS]
** [http://sites.gersteinlab.org/account-summary/ Wordpress Accounts Summary]
 
* Calls, meetings, &c
**A (password-protected) archive of the lab's minutes thread is available at [http://glminutes.wordpress.com GLMinutes.wordpress.com] (more info about the [[Wordpress Minutes Stream]])
**[http://wiki.gersteinlab.org/labinfo/Making_conference_calls_or_lab_related_calls Making phone calls] (SKYPE information included) page.
**[http://wiki.gersteinlab.org/labinfo/Subscribing_NIH_email_list Subscribing to a NIH email list] page.
** Information on [[Meeting Invites]]
** [https://portal.infocus.com/support/Product%20Downloads/InFocus_IN3114_3116_ReferenceGuide_EN.pdf Manual] for new projector ([https://portal.infocus.com/support/Product%20Pages/downloads.aspx?mic=IN3116&on=downloads Other info])
**[[Bass434]] introduction
**Booking [[Meeting Room]]
**Booking a [[Conference Room at 100 College]]
 
* Some Useful University Policies
* Some Useful University Policies
** [https://covid19.yale.edu/ COVID] [https://symptomtracking.yale.edu Symptom Tracking] [https://dailyhealthcheck.yale.edu/web-survey Web Survey] [[Covid-19 Guidelines | Guidelines]]
** Snippets from [[MB&B Policy for Graduate Students on Vacation and Travel]] and [[Policy on Postdoc Appointments]]
** Snippets from [[MB&B Policy for Graduate Students on Vacation and Travel]] and [[Policy on Postdoc Appointments]]
** Policies on visitors: [http://provost.yale.edu/minors-in-labs Policy on Minors in Labs] ([http://archive.gersteinlab.org/docs/2010/06.02/Policy-on-Minors-in-Labs.pdf  old]), [http://provost.yale.edu/policy-access-university-labs-and-research-facilities Policy on Access to the Lab]
** Policies on visitors: [http://provost.yale.edu/minors-in-labs Policy on Minors in Labs] ([http://archive.gersteinlab.org/docs/2010/06.02/Policy-on-Minors-in-Labs.pdf  old]), [http://provost.yale.edu/policy-access-university-labs-and-research-facilities Policy on Access to the Lab]
** Travel per diem information: [http://www.yale.edu/ppdev/Guides/bluepages.pdf Yale Blue Pages]
** Travel per diem information: [http://www.yale.edu/ppdev/Guides/bluepages.pdf Yale Blue Pages]
* Useful links: [http://www.yale.edu/its/accounts/netid.html Yale NetID System], [http://www.yale.edu/its/network/vpn_faq.html Yale VPN FAQ], [http://www.yale.edu/its/network/wireless/faq.html Yale Wireless FAQ], [http://www.yale.edu/its/telecom/dialing.html Yale Dialing Instructions], [https://config.mail.yale.edu Configuring Yale email], [http://www.yale.edu/ris/main.html Poster Printing]
** [https://your.yale.edu/policies-procedures/policies/3401-general-payment#3401.3  Yale Purchasing Buy/Pay Matrix 3401.3]
* [http://maguro.cs.yale.edu:8000/Center_for_High_Performance_Computation_in_Biology_and_Biomedicine Yale High Performance Computing Center]
 
* Information on [[what grant to charge something to]]
* Documents
* Information on [[Meeting Invites]]
** [[Uploading_documents]]
* [https://portal.infocus.com/support/Product%20Downloads/InFocus_IN3114_3116_ReferenceGuide_EN.pdf Manual] for new projector ([https://portal.infocus.com/support/Product%20Pages/downloads.aspx?mic=IN3116&on=downloads Other info])
** Letterhead templates [https://docs.google.com/document/d/1Uj1kaFiPIBmBFv2yccVkYXkJulIW1jk6/edit Current Version] (Older versions at http://wiki.gersteinlab.org/labinfo/index.php/Templates)
 
* Misc
**[[Getting Mark's signature for documents]]
**[[Temperature in Bass 432a]], real time measurements (see how cold it gets)
**Prominent [[public wiki pages linked from elsewhere]]
**[http://wiki.gersteinlab.org/labinfo/Using_copier Using copier] page.
**[http://www.facebook.com/group.php?gid=54856837624 Gerstein Lab Facebook Page]
**[http://bioinfo.mbb.yale.edu/pipermail/web/ Public WEB Mailing List] (no longer in use)
** [[Recommendation Letters]]
**[https://docs.google.com/spreadsheet/pub?key=0ApmN6KUB6ILdcDh0Z1luZ3VnTVc3QV9YSmtQaXBpZXc&single=true&gid=2&output=html Magazine Subscriptions]
** Google Groups: [http://group.gersteinlab.org homepage], for [http://docs.google.com/a/gersteinlab.org DOCS]
** Useful links: [http://www.yale.edu/its/accounts/netid.html Yale NetID System], [http://www.yale.edu/its/network/vpn_faq.html Yale VPN FAQ], [http://www.yale.edu/its/network/wireless/faq.html Yale Wireless FAQ], [http://www.yale.edu/its/telecom/dialing.html Yale Dialing Instructions], [https://config.mail.yale.edu Configuring Yale email], [http://www.yale.edu/ris/main.html Poster Printing]
** Yale helpdesk 203-432-4700 helpdesk@yale.edu (For issues regarding Yale's network, computing, power, and phones.)
**[[OpenStack]]
**[[IDP report]]
**[[PEC package preprints]]
**[[Summary of undergraduate involvement]]
**Lab [http://bit.ly/mglab-folder google folder]
**List of bioinformatics conferences: [https://docs.google.com/spreadsheets/d/1_dAyUts51jgici9dy-l0IVPypUCRvmLsVXSrmVEXjoI/edit?usp=sharing Link to Google Drive document]

Latest revision as of 18:53, 19 December 2025

Important Public Items


In general, this wiki hosts general, public information about the Gerstein Lab, beyond that on the homepage. Lab members should consult the private lab wiki for lab-specific information (login as user "public"). To edit this wiki, contact the Infoadmin

Other Stuff for the Public

Info for New People

  • Please follow the steps of Onboarding to apply and fill in the new members’ entry process.
  • Glossary of terms.
  • Initialed people should have access to Google Drive

Info for Lab Signature

  • For all lab signatures this the procedure: ask LI & CC. MG will reply w/ an email say "sign0mg" LI will sign.

Info for Lab Members and Collaborators

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