Main Page

This wiki hosts general, public information about the Gerstein Lab. Lab members should consult the private lab wiki for lab-specific information (login as user "public"). There's also a wiki for lab meetings (login as user "private"). To edit this wiki, contact the Infoadmin

Important Public Items

(not on the homepage yet, but will be soon)

• Public Documents about the lab

Software and tools

• RSEQtools: a computational suite for the analysis of RNA-Seq data including a compact and "privacy-aware" data format.
• FusionSeq: a computational framework to identify fusion transcripts from paired-end RNA-Seq data.
• ACT Tool: for aggregation and correlation analyses of genomic signal tracks
• PeakSeq: a computational tool for analyzing ChIP-Seq data
• Cbb752b11: CBB 752b in 2011

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• FAQ (new) on programs
• Prominent public wiki pages linked from elsewhere

Info for New People

• General Information for New Undergraduates thinking about working in the lab
• Information for new people starting in the lab from the private wiki ([1], [2], [3], [4])

Info for Lab Members and Collaborators

• Lab Computing Resources page.
• Making phone calls (SKYPE information included) page.
• Using copier page.
• Gerstein Lab Facebook Page
• Public WEB Mailing List (no longer in use)
• Streamlining Draft Flow (Ideas for streamlining the process of drafting and submitting papers)
  • Way to list Mark's Affiliation on papers
  • See xxmg@gersteinlab.org for correct address to use for paper correspondence.
  • Note that xxmg at bioinfo.mbb.yale.edu for paper correspondence is deprecated.
• Pointers on Powerpoints and Pointers on Grant Sections
• Recommendation Letters
• Lab Resources Document (NIH form)
• Papers Page Code
• Google Groups: homepage, for DOCS
• Some Useful University Policies
  • Snippets from MB&B Policy for Graduate Students on Vacation and Travel, Policy on Minors in Labs, Policy on Postdoc Appointments
  • Travel per diem information: Yale Blue Pages
• Useful links: Yale NetID System, Yale VPN FAQ, Yale Wireless FAQ, Yale Dialing Instructions, Configuring Yale email, Poster Printing
• Yale High Performance Computing Center
• Information on what grant to charge something to
• Information on Meeting Invites
• System Status MBGNet LAN access only.
• Traffic on I95