Proof Stage Checklist

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* Funding
* Funding
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** remember to add funding acknowledgments with precise grant number, so paper goes into PMC (see below)
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** remember to add funding acknowledgments with precise grant numbers, so the paper goes into PMC (see below)
*** This needs to be updated on the papers page entry (see below) and can be done as soon as there is a bioxriv.   
*** This needs to be updated on the papers page entry (see below) and can be done as soon as there is a bioxriv.   
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** Discuss with MG the grant for the page/reprint charges (not necessarily the same as the PMC)
+
*** Many of the grant abbreviations are visible via http://papers.gersteinlab.org/subject or http://info.gersteinlab.org/Summaries . For additional ones work with the lab asst. on the correct abbreviation.
 +
** Discuss with MG the grant for the page/reprint charges (usually but not necessarily the same as the PMC)
* Papers Page (papers.gersteinlab.org)
* Papers Page (papers.gersteinlab.org)
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** Get a lab ID for the paper from Mark (eg lab "ID=cmptxn"). Occasionally, we can use the pubmed ID here, but normally this is the ID that has been used internally during the project pre-publication.
+
** Get a lab ID for the paper from Mark (eg lab "ID=cmptxn"). Occasionally, we can use the PubMed ID here, but normally this is the ID that has been used internally during the project pre-publication.
** Do a papers page rebuild, requires lab ID & website from above + (hopefully) the PubMed ID - ie http://info.gersteinlab.org/Papers_Page_Code
** Do a papers page rebuild, requires lab ID & website from above + (hopefully) the PubMed ID - ie http://info.gersteinlab.org/Papers_Page_Code
*** Send the following information to whoever is in charge of rebuilding the papers page:
*** Send the following information to whoever is in charge of rebuilding the papers page:

Latest revision as of 20:20, 14 August 2021

  • MG affiliation and Corresponding author
  • Funding
    • remember to add funding acknowledgments with precise grant numbers, so the paper goes into PMC (see below)
    • Discuss with MG the grant for the page/reprint charges (usually but not necessarily the same as the PMC)
  • Tools & Resources
    • Software from the paper should be listed on the lab tools page (http://info.gersteinlab.org/Resources) & in the lab github (https://github.gersteinlab.org)
    • Make sure there exists a minimal and maximally durable distribution of code and key data as a simple tarball
    • Make sure you have a final URL for website/github materials from above and enter it into the papers page
    • Make sure you use long-term email addresses for software contacts and a link to the lab FAQ
    • Make sure you have proper, long-term links for all files (files.gersteinlab.org, no dropbox or personal homepage links)
    • You can use the "website" field on the papers page to link your github site.
  • PMC & preprints
    • make sure journal publishes in PubMed Central (send email to editor to confirm this)
    • Do a biorxiv submission (or another equiv. preprint server)
    • use pi at gersteinlab.org for bioxriv submission
      • Link this from the papers page
      • Update bioRxiv preprint when the paper is published (wait 2-3 weeks before contacting bioRxiv - bioRxiv should automatically link it ).
  • Tweet
    • Tweet a ~200 char tweet on the paper and mention MG (@MarkGerstein), including bits of the title; you can include an image too. He will retweet.
    • You can use the lab twitter (@GersteinLab)
    • Some recent examples:
https://twitter.com/markgerstein/status/789117961843900417 
https://twitter.com/markgerstein/status/851125314264715267
https://twitter.com/markgerstein/status/813772503063609344
  • Wikipedia
    • Try to link your paper to a relevant article on Wikipedia and edit that entry as appropriate
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