NCVAR
From GersteinInfo
(Difference between revisions)
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Specificity of TF-binding sites and the DNase sites files downloaded from the UCSC genome browser | Specificity of TF-binding sites and the DNase sites files downloaded from the UCSC genome browser | ||
| - | '''TF motif''' '''track''' '''group''' '''cell line''' '''link''' | + | '''TF motif''' '''track''' '''group''' '''cell line''' '''link''' |
| - | CTCF Open Chromatin Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksGm12878CtcfV3.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12878CtcfV3] | + | CTCF Open Chromatin Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksGm12878CtcfV3.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12878CtcfV3] |
| - | STAT1 Yale TFBS Regulation Hela-S3 (IFNr 30min) [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksHelas3ifngStat1.narrowPeak.gz wgEncodeYaleChIPseqPeaksHelas3ifngStat1] | + | STAT1 Yale TFBS Regulation Hela-S3 (IFNr 30min) [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksHelas3ifngStat1.narrowPeak.gz wgEncodeYaleChIPseqPeaksHelas3ifngStat1] |
| - | NFkB Yale TFBS Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa.narrowPeak.gz wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa] | + | NFkB Yale TFBS Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa.narrowPeak.gz wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa] |
| - | c-Myc Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CmycV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CmycV2] | + | c-Myc Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CmycV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CmycV2] |
| - | c-Fos Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CfosV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CfosV2] | + | c-Fos Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CfosV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CfosV2] |
| - | c-Jun Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CjunV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CjunV2] | + | c-Jun Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CjunV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CjunV2] |
| - | JunD Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562JundV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562JundV2] | + | JunD Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562JundV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562JundV2] |
PolII | PolII | ||
DNase | DNase | ||
Revision as of 15:20, 19 April 2011
Specificity of TF-binding sites and the DNase sites files downloaded from the UCSC genome browser
TF motif track group cell line link CTCF Open Chromatin Regulation GM12878 wgEncodeUtaChIPseqPeaksGm12878CtcfV3 STAT1 Yale TFBS Regulation Hela-S3 (IFNr 30min) wgEncodeYaleChIPseqPeaksHelas3ifngStat1 NFkB Yale TFBS Regulation GM12878 wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa c-Myc Yale TFBS Regulation K562 wgEncodeYaleChIPseqPeaksK562CmycV2 c-Fos Yale TFBS Regulation K562 wgEncodeYaleChIPseqPeaksK562CfosV2 c-Jun Yale TFBS Regulation K562 wgEncodeYaleChIPseqPeaksK562CjunV2 JunD Yale TFBS Regulation K562 wgEncodeYaleChIPseqPeaksK562JundV2 PolII DNase
