Proof Stage Checklist
From GersteinInfo
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* Papers Page (papers.gersteinlab.org) | * Papers Page (papers.gersteinlab.org) | ||
- | ** Get a | + | ** Get a lab ID for the paper from Mark (eg lab "ID=cmptxn"). Occasionally, we can use the pubmed ID here, but normally this is the ID that has been used internally the project pre-publication. |
- | + | ** Do a papers page rebuild, requires lab ID & website from above + (hopefully) the PubMed ID - ie http://info.gersteinlab.org/Papers_Page_Code | |
- | + | ||
- | ** Do a papers page rebuild, requires ID & website from above + (hopefully) the PubMed ID - ie http://info.gersteinlab.org/Papers_Page_Code | + | |
*** Make sure paper is appropriately tagged on the papers -- eg tag with http://papers.gersteinlab.org/subject/coretools or http://papers.gersteinlab.org/subject/resources | *** Make sure paper is appropriately tagged on the papers -- eg tag with http://papers.gersteinlab.org/subject/coretools or http://papers.gersteinlab.org/subject/resources | ||
- | * PMC | + | * Tools & Resources |
+ | ** Software from the paper should be listed on the lab tools page (http://info.gersteinlab.org/Resources) & in the lab github (https://github.gersteinlab.org) | ||
+ | ** Make sure there exists a minimal and maximally durable distribution of code and key data as a simple tarball | ||
+ | ** Make sure you have a final URL for website/github materials from above and enter it into the papers page | ||
+ | ** Make sure you use long-term email addresses for software contacts and a link to the lab FAQ | ||
+ | ** Make sure you have proper, long-term links for all files (files.gersteinlab.org, no dropbox or personal homepage links) | ||
+ | |||
+ | * PMC & reprints | ||
** remember to add funding acknowledgments with precise grant number, so paper goes into PMC | ** remember to add funding acknowledgments with precise grant number, so paper goes into PMC | ||
** make sure journal publishes in PubMed Central (send email to editor to confirm this) | ** make sure journal publishes in PubMed Central (send email to editor to confirm this) | ||
** discuss with the Mark the grant for the page/reprint charges (not necessarily the same as the PMC) | ** discuss with the Mark the grant for the page/reprint charges (not necessarily the same as the PMC) | ||
- | ** Do a preprint as a public lab doc or a biorxiv submission if your paper won't go into PMC | + | ** Do a preprint as a public lab doc or a biorxiv submission if your paper won't go into PMC -- use *pi@gersteinlab.org* |
*** Link this from the papers page | *** Link this from the papers page | ||
+ | *** Update bioRxiv preprint when the paper is published (wait 2-3 weeks before contacting bioRxiv - bioRxiv should automatically link it ). | ||
* Slides & Images | * Slides & Images | ||
** Make sure Mark has "slide packs" for the paper | ** Make sure Mark has "slide packs" for the paper | ||
+ | *** Try to use a current slide pack template | ||
** Do a homepage image, pad with white space to fill out to exact specifications, viz http://info.gersteinlab.org/Homepage_image_gallery . | ** Do a homepage image, pad with white space to fill out to exact specifications, viz http://info.gersteinlab.org/Homepage_image_gallery . | ||
* Tweet | * Tweet | ||
- | ** | + | **Tweet a ~200 char tweet on the paper and mention Mark (@MarkGerstein), including bits of the title; you can include an image too. Mark will retweet. |
**Some recent examples: | **Some recent examples: | ||
https://twitter.com/markgerstein/status/789117961843900417 | https://twitter.com/markgerstein/status/789117961843900417 |
Revision as of 20:18, 16 August 2019
- Corresponding author
- CHANGE corresponding email to mark ((at)) gersteinlab.org from pi ((at)) gersteinlab.org
- Make sure Mark's Orcid ID is used, viz: http://orcid.org/0000-0002-9746-3719
- Papers Page (papers.gersteinlab.org)
- Get a lab ID for the paper from Mark (eg lab "ID=cmptxn"). Occasionally, we can use the pubmed ID here, but normally this is the ID that has been used internally the project pre-publication.
- Do a papers page rebuild, requires lab ID & website from above + (hopefully) the PubMed ID - ie http://info.gersteinlab.org/Papers_Page_Code
- Make sure paper is appropriately tagged on the papers -- eg tag with http://papers.gersteinlab.org/subject/coretools or http://papers.gersteinlab.org/subject/resources
- Tools & Resources
- Software from the paper should be listed on the lab tools page (http://info.gersteinlab.org/Resources) & in the lab github (https://github.gersteinlab.org)
- Make sure there exists a minimal and maximally durable distribution of code and key data as a simple tarball
- Make sure you have a final URL for website/github materials from above and enter it into the papers page
- Make sure you use long-term email addresses for software contacts and a link to the lab FAQ
- Make sure you have proper, long-term links for all files (files.gersteinlab.org, no dropbox or personal homepage links)
- PMC & reprints
- remember to add funding acknowledgments with precise grant number, so paper goes into PMC
- make sure journal publishes in PubMed Central (send email to editor to confirm this)
- discuss with the Mark the grant for the page/reprint charges (not necessarily the same as the PMC)
- Do a preprint as a public lab doc or a biorxiv submission if your paper won't go into PMC -- use *pi@gersteinlab.org*
- Link this from the papers page
- Update bioRxiv preprint when the paper is published (wait 2-3 weeks before contacting bioRxiv - bioRxiv should automatically link it ).
- Slides & Images
- Make sure Mark has "slide packs" for the paper
- Try to use a current slide pack template
- Do a homepage image, pad with white space to fill out to exact specifications, viz http://info.gersteinlab.org/Homepage_image_gallery .
- Make sure Mark has "slide packs" for the paper
- Tweet
- Tweet a ~200 char tweet on the paper and mention Mark (@MarkGerstein), including bits of the title; you can include an image too. Mark will retweet.
- Some recent examples:
https://twitter.com/markgerstein/status/789117961843900417 https://twitter.com/markgerstein/status/851125314264715267 https://twitter.com/markgerstein/status/813772503063609344
- Tag for this page
- Proofsx57m
- Linked from Streamlining_Draft_Flow = x57m