NCVAR

From GersteinInfo

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
  '''TF motif''' '''track''' '''group''' '''cell line''' '''link'''
  '''TF motif''' '''track''' '''group''' '''cell line''' '''link'''
  CTCF Open Chromatin Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksGm12878CtcfV3.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12878CtcfV3]
  CTCF Open Chromatin Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksGm12878CtcfV3.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12878CtcfV3]
-
  STAT1 Yale TFBS Regulation Hela-S3 (IFNr 30min) [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksHelas3ifngStat1.narrowPeak.gz wgEncodeYaleChIPseqPeaksHelas3ifngStat1]
+
  STAT1 Yale TFBS Regulation Hela-S3 (IFNr 30min) [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksHelas3ifngStat1.narrowPeak.gz wgEncodeYaleChIPseqPeaksHelas3ifngStat1]
-
  NFkB Yale TFBS Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa.narrowPeak.gz wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa]
+
  NFkB Yale TFBS Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa.narrowPeak.gz wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa]
-
  c-Myc Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CmycV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CmycV2]
+
  c-Myc Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CmycV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CmycV2]
-
  c-Fos Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CfosV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CfosV2]
+
  c-Fos Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CfosV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CfosV2]
-
  c-Jun Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CjunV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CjunV2]
+
  c-Jun Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CjunV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CjunV2]
-
  JunD Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562JundV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562JundV2]
+
  JunD Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562JundV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562JundV2]
  PolII
  PolII
  DNase
  DNase

Revision as of 15:23, 19 April 2011

Specificity of TF-binding sites and the DNase sites files downloaded from the UCSC genome browser

TF motif	track			group		cell line			link
CTCF		Open Chromatin		Regulation	GM12878				wgEncodeUtaChIPseqPeaksGm12878CtcfV3
STAT1		Yale TFBS		Regulation	Hela-S3 (IFNr 30min)		wgEncodeYaleChIPseqPeaksHelas3ifngStat1
NFkB		Yale TFBS		Regulation	GM12878				wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa
c-Myc		Yale TFBS		Regulation	K562				wgEncodeYaleChIPseqPeaksK562CmycV2
c-Fos		Yale TFBS		Regulation	K562				wgEncodeYaleChIPseqPeaksK562CfosV2
c-Jun		Yale TFBS		Regulation	K562				wgEncodeYaleChIPseqPeaksK562CjunV2
JunD		Yale TFBS		Regulation	K562				wgEncodeYaleChIPseqPeaksK562JundV2
PolII
DNase
Personal tools