FusionSeq
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<center>[http://rnaseq.gersteinlab.org/fusionseq/ FusionSeq main web page]</center> | <center>[http://rnaseq.gersteinlab.org/fusionseq/ FusionSeq main web page]</center> | ||
This document provides the information for downloading, installing, compile and run FusionSeq. Please note that these tools were tested on a multi-node cluster of computing nodes with Linux Red Hat as operating system and PBS as scheduler system. FusionSeq programs are written in C and should likely compile to most Unix/Linux platforms. We used the gcc complier (version 3.4.6 20060404) to compile the source code. | This document provides the information for downloading, installing, compile and run FusionSeq. Please note that these tools were tested on a multi-node cluster of computing nodes with Linux Red Hat as operating system and PBS as scheduler system. FusionSeq programs are written in C and should likely compile to most Unix/Linux platforms. We used the gcc complier (version 3.4.6 20060404) to compile the source code. | ||
| - | However, this is not a plug-and-play program, but it requires the user to compile, install and run a set of programs. Please read the [[Requirements|requirements]] before [[#Download|downloading]] FusionSeq. | + | However, this is not a plug-and-play program, but it requires the user to compile, install and run a set of programs. Please read the [[Requirements|requirements]] '''before''' [[#Download|downloading]] FusionSeq. |
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| + | If you have any questions, please check the [[FusionSeq_FAQ|FAQ]] or send an email to [mailto:fusionseq-faq@gersteinlab.org fusionseq-faq@gersteinlab.org] | ||
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==[[FusionSeq_FAQ|Frequently Asked Questions (FAQ)]]== | ==[[FusionSeq_FAQ|Frequently Asked Questions (FAQ)]]== | ||
| - | Solutions to common problems. | + | Solutions to common problems. If your issue is not described in the [[FusionSeq_FAQ|FAQ]], please send an email to [mailto:fusionseq-faq@gersteinlab.org fusionseq-faq@gersteinlab.org] |
==[[FusionSeq Gallery|Gallery]]== | ==[[FusionSeq Gallery|Gallery]]== | ||
Some figures about FusionSeq. | Some figures about FusionSeq. | ||
Revision as of 12:31, 17 February 2011
This document provides the information for downloading, installing, compile and run FusionSeq. Please note that these tools were tested on a multi-node cluster of computing nodes with Linux Red Hat as operating system and PBS as scheduler system. FusionSeq programs are written in C and should likely compile to most Unix/Linux platforms. We used the gcc complier (version 3.4.6 20060404) to compile the source code. However, this is not a plug-and-play program, but it requires the user to compile, install and run a set of programs. Please read the requirements before downloading FusionSeq.
If you have any questions, please check the FAQ or send an email to fusionseq-faq@gersteinlab.org
Contents |
FusionSeq Requirements
List of required programs and data. Please read this section before downloading FusionSeq.
Download
Links to FusionSeq source code and data sets.
Installation and Configuration of FusionSeq
Instructions to install and configure FusionSeq.
How to execute FusionSeq
An example workflow of FusionSeq.
List of programs
Description of all the FusionSeq programs.
Test Datasets
A few datasets to test FusionSeq installation.
Demo
You can see some of the results of FusionSeq as described in the paper. Use the sample IDs reported in Table 1, e.g. 106_T, 1700_D.
Frequently Asked Questions (FAQ)
Solutions to common problems. If your issue is not described in the FAQ, please send an email to fusionseq-faq@gersteinlab.org
Gallery
Some figures about FusionSeq.
