FusionSeq
From GersteinInfo
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==[[FusionSeq_Test Datasets|Test Datasets]]== | ==[[FusionSeq_Test Datasets|Test Datasets]]== | ||
A few datasets to test FusionSeq installation. | A few datasets to test FusionSeq installation. | ||
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| + | ==[http://dynamic.gersteinlab.org/people/asboner/FusionSeq/geneFusions_cgi Demo]== | ||
| + | You can see some of the results of FusionSeq as described in the paper. Use the sample IDs reported in Table 1, e.g. 106_T, 1700_D. | ||
==[[FusionSeq_FAQ|Frequently Asked Questions (FAQ)]]== | ==[[FusionSeq_FAQ|Frequently Asked Questions (FAQ)]]== | ||
Revision as of 15:59, 7 December 2010
This document provides the information for downloading, installing, compile and run FusionSeq. Please note that these tools were tested on a multi-node cluster of computing nodes with Linux Red Hat as operating system and PBS as scheduler system. FusionSeq programs are written in C and should likely compile to most Unix/Linux platforms. We used the gcc complier (version 3.4.6 20060404) to compile the source code. However, this is not a plug-and-play program, but it requires the user to compile, install and run a set of programs. Please read the requirements before downloading FusionSeq.
Contents |
FusionSeq Requirements
List of required programs and data. Please read this section before downloading FusionSeq.
Download
Links to FusionSeq source code and data sets.
Installation and Configuration of FusionSeq
Instructions to install and configure FusionSeq.
How to execute FusionSeq
An example workflow of FusionSeq.
List of programs
Description of all the FusionSeq programs.
Test Datasets
A few datasets to test FusionSeq installation.
Demo
You can see some of the results of FusionSeq as described in the paper. Use the sample IDs reported in Table 1, e.g. 106_T, 1700_D.
Frequently Asked Questions (FAQ)
Solutions to common problems.
Gallery
Some figures about FusionSeq.
