Proof Stage Checklist
From GersteinInfo
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- | * | + | ==Short version== |
- | * | + | * correct MG email + Orcid |
- | ** | + | * papers page update with: correct labid, tags, and correct grant + links to bioxriv and website/github |
+ | * github should have a license/permissions | ||
+ | * lab homepage image | ||
+ | * tweet | ||
+ | * slide deck | ||
- | + | (see '''<code>Proofsx57m</code>''' tag on correspondence) | |
+ | ==Long version of checklist== | ||
+ | * MG affiliation and Corresponding author | ||
** CHANGE corresponding email to mark ((at)) gersteinlab.org from pi ((at)) gersteinlab.org | ** CHANGE corresponding email to mark ((at)) gersteinlab.org from pi ((at)) gersteinlab.org | ||
** Make sure Mark's Orcid ID is used, viz: http://orcid.org/0000-0002-9746-3719 | ** Make sure Mark's Orcid ID is used, viz: http://orcid.org/0000-0002-9746-3719 | ||
+ | ** Check that MG's [[Affiliation]] is accurate | ||
+ | |||
+ | * Funding + License | ||
+ | ** remember to add funding acknowledgments with precise grant numbers, so the paper goes into PMC (see below) | ||
+ | *** This needs to be updated on the papers page entry (see below) and can be done as soon as there is a bioxriv. | ||
+ | *** Many of the grant abbreviations are visible via http://papers.gersteinlab.org/subject or http://info.gersteinlab.org/Summaries . For additional ones work with the lab asst. on the correct abbreviation. | ||
+ | ** Discuss with MG the grant for the page/reprint charges (usually but not necessarily the same as the PMC) | ||
+ | ** For license, go for open access for non-commercial use unless prohibitively expensive | ||
+ | |||
+ | * Papers Page (papers.gersteinlab.org) | ||
+ | ** Get a lab ID for the paper from Mark (eg lab "ID=cmptxn"). Occasionally, we can use the PubMed ID here, but normally this is the ID that has been used internally during the project pre-publication. | ||
+ | ** Do a papers page rebuild, requires lab ID & website from above + (hopefully) the PubMed ID - ie http://info.gersteinlab.org/Papers_Page_Code | ||
+ | *** Send the following information to whoever is in charge of rebuilding the papers page: | ||
+ | **** PubMed ID or doi of the preprint | ||
+ | **** A link to the paper | ||
+ | **** A link to the tools or resources (see "Tools & Resources" section below) | ||
+ | **** Appropriate tags and topics, e.g. http://papers.gersteinlab.org/subject/coretools or http://papers.gersteinlab.org/subject/resources (a full list can be obtained from http://papers.gersteinlab.org/subject/). You may propose new tags if they don't appear. | ||
+ | **** Any additional information such as co-first authorship | ||
+ | *** Make sure paper is appropriately tagged on the papers -- eg tag with http://papers.gersteinlab.org/subject/coretools or http://papers.gersteinlab.org/subject/resources | ||
+ | *** Note the rebuild can be done before the paper comes out with a PMID, using just a biorxiv | ||
+ | ** Co-first and co-corresponding authors can be indicated with the footnote field | ||
+ | ** Use the link field to directly link the journal site (particularly if there is no pubmed) | ||
+ | |||
+ | * Tools & Resources | ||
+ | ** Software from the paper should be listed on the lab tools page (http://info.gersteinlab.org/Resources) & in the lab github (https://github.gersteinlab.org) | ||
+ | ** Make sure there exists a minimal and maximally durable distribution of code and key data as a simple tarball | ||
+ | ** Make sure you software links the permissions statement & has a license (MIT) | ||
+ | ** Make sure you have a final URL for website/github materials from above and enter it into the papers page | ||
+ | ** Make sure you use long-term email addresses for software contacts and a link to the lab FAQ | ||
+ | ** Make sure you have proper, long-term links for all files (files.gersteinlab.org, no dropbox or personal homepage links) | ||
+ | ** You can use the "website" field on the papers page to link your github site. | ||
+ | |||
+ | * PMC & preprints | ||
+ | ** make sure journal publishes in PubMed Central (send email to editor to confirm this) | ||
+ | ** Do a biorxiv submission (or another equiv. preprint server) | ||
+ | ** use pi at gersteinlab.org for bioxriv submission | ||
+ | *** Link this from the papers page | ||
+ | *** Update bioRxiv preprint when the paper is published (wait 2-3 weeks before contacting bioRxiv - bioRxiv should automatically link it ). | ||
- | * | + | * Slides & Images |
- | ** | + | ** Make sure Mark has "slide packs" for the paper |
- | ** | + | *** Try to use a current slide pack template - a recent lecture at http://lectures.gersteinlab.org |
- | ** Do a homepage image, pad with white space to fill out exact specifications, viz http://info.gersteinlab.org/Homepage_image_gallery . | + | ** Do a homepage image, pad with white space to fill out to exact specifications, viz http://info.gersteinlab.org/Homepage_image_gallery . |
- | + | ||
* Tweet | * Tweet | ||
- | + | **Tweet a ~200 char tweet on the paper and mention MG (@MarkGerstein), including bits of the title; you can include an image too. He will retweet. | |
+ | **You can use the lab twitter (@GersteinLab) | ||
+ | **Some recent examples: | ||
+ | https://twitter.com/markgerstein/status/789117961843900417 | ||
+ | https://twitter.com/markgerstein/status/851125314264715267 | ||
+ | https://twitter.com/markgerstein/status/813772503063609344 | ||
- | * | + | * Wikipedia |
+ | ** Try to link your paper to a relevant article on Wikipedia and edit that entry as appropriate | ||
- | + | * Tag for this page | |
+ | ** [[Proofsx57m]] | ||
+ | ** Linked from [[Streamlining_Draft_Flow]] = [[x57m]] |
Latest revision as of 10:26, 21 July 2024
Short version
- correct MG email + Orcid
- papers page update with: correct labid, tags, and correct grant + links to bioxriv and website/github
- github should have a license/permissions
- lab homepage image
- tweet
- slide deck
(see Proofsx57m
tag on correspondence)
Long version of checklist
- MG affiliation and Corresponding author
- CHANGE corresponding email to mark ((at)) gersteinlab.org from pi ((at)) gersteinlab.org
- Make sure Mark's Orcid ID is used, viz: http://orcid.org/0000-0002-9746-3719
- Check that MG's Affiliation is accurate
- Funding + License
- remember to add funding acknowledgments with precise grant numbers, so the paper goes into PMC (see below)
- This needs to be updated on the papers page entry (see below) and can be done as soon as there is a bioxriv.
- Many of the grant abbreviations are visible via http://papers.gersteinlab.org/subject or http://info.gersteinlab.org/Summaries . For additional ones work with the lab asst. on the correct abbreviation.
- Discuss with MG the grant for the page/reprint charges (usually but not necessarily the same as the PMC)
- For license, go for open access for non-commercial use unless prohibitively expensive
- remember to add funding acknowledgments with precise grant numbers, so the paper goes into PMC (see below)
- Papers Page (papers.gersteinlab.org)
- Get a lab ID for the paper from Mark (eg lab "ID=cmptxn"). Occasionally, we can use the PubMed ID here, but normally this is the ID that has been used internally during the project pre-publication.
- Do a papers page rebuild, requires lab ID & website from above + (hopefully) the PubMed ID - ie http://info.gersteinlab.org/Papers_Page_Code
- Send the following information to whoever is in charge of rebuilding the papers page:
- PubMed ID or doi of the preprint
- A link to the paper
- A link to the tools or resources (see "Tools & Resources" section below)
- Appropriate tags and topics, e.g. http://papers.gersteinlab.org/subject/coretools or http://papers.gersteinlab.org/subject/resources (a full list can be obtained from http://papers.gersteinlab.org/subject/). You may propose new tags if they don't appear.
- Any additional information such as co-first authorship
- Make sure paper is appropriately tagged on the papers -- eg tag with http://papers.gersteinlab.org/subject/coretools or http://papers.gersteinlab.org/subject/resources
- Note the rebuild can be done before the paper comes out with a PMID, using just a biorxiv
- Send the following information to whoever is in charge of rebuilding the papers page:
- Co-first and co-corresponding authors can be indicated with the footnote field
- Use the link field to directly link the journal site (particularly if there is no pubmed)
- Tools & Resources
- Software from the paper should be listed on the lab tools page (http://info.gersteinlab.org/Resources) & in the lab github (https://github.gersteinlab.org)
- Make sure there exists a minimal and maximally durable distribution of code and key data as a simple tarball
- Make sure you software links the permissions statement & has a license (MIT)
- Make sure you have a final URL for website/github materials from above and enter it into the papers page
- Make sure you use long-term email addresses for software contacts and a link to the lab FAQ
- Make sure you have proper, long-term links for all files (files.gersteinlab.org, no dropbox or personal homepage links)
- You can use the "website" field on the papers page to link your github site.
- PMC & preprints
- make sure journal publishes in PubMed Central (send email to editor to confirm this)
- Do a biorxiv submission (or another equiv. preprint server)
- use pi at gersteinlab.org for bioxriv submission
- Link this from the papers page
- Update bioRxiv preprint when the paper is published (wait 2-3 weeks before contacting bioRxiv - bioRxiv should automatically link it ).
- Slides & Images
- Make sure Mark has "slide packs" for the paper
- Try to use a current slide pack template - a recent lecture at http://lectures.gersteinlab.org
- Do a homepage image, pad with white space to fill out to exact specifications, viz http://info.gersteinlab.org/Homepage_image_gallery .
- Make sure Mark has "slide packs" for the paper
- Tweet
- Tweet a ~200 char tweet on the paper and mention MG (@MarkGerstein), including bits of the title; you can include an image too. He will retweet.
- You can use the lab twitter (@GersteinLab)
- Some recent examples:
https://twitter.com/markgerstein/status/789117961843900417 https://twitter.com/markgerstein/status/851125314264715267 https://twitter.com/markgerstein/status/813772503063609344
- Wikipedia
- Try to link your paper to a relevant article on Wikipedia and edit that entry as appropriate
- Tag for this page
- Proofsx57m
- Linked from Streamlining_Draft_Flow = x57m