Proof Stage Checklist

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(→Long version of checklist)
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** Check that MG's [[Affiliation]] is accurate  
** Check that MG's [[Affiliation]] is accurate  
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* Funding
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* Funding + License
** remember to add funding acknowledgments with precise grant numbers, so the paper goes into PMC (see below)
** remember to add funding acknowledgments with precise grant numbers, so the paper goes into PMC (see below)
*** This needs to be updated on the papers page entry (see below) and can be done as soon as there is a bioxriv.   
*** This needs to be updated on the papers page entry (see below) and can be done as soon as there is a bioxriv.   
*** Many of the grant abbreviations are visible via http://papers.gersteinlab.org/subject or http://info.gersteinlab.org/Summaries . For additional ones work with the lab asst. on the correct abbreviation.  
*** Many of the grant abbreviations are visible via http://papers.gersteinlab.org/subject or http://info.gersteinlab.org/Summaries . For additional ones work with the lab asst. on the correct abbreviation.  
** Discuss with MG the grant for the page/reprint charges (usually but not necessarily the same as the PMC)
** Discuss with MG the grant for the page/reprint charges (usually but not necessarily the same as the PMC)
 +
** For license, go for open access for non-commercial use unless prohibitively expensive
* Papers Page (papers.gersteinlab.org)
* Papers Page (papers.gersteinlab.org)

Revision as of 10:25, 21 July 2024

Short version

  • correct MG email + Orcid
  • papers page update with: correct labid, tags, and correct grant + links to bioxriv and website/github
  • github should have a license/permissions
  • lab homepage image
  • tweet
  • slide deck

(use Proofsx57m tag on correspondence)

Long version of checklist

  • MG affiliation and Corresponding author
  • Funding + License
    • remember to add funding acknowledgments with precise grant numbers, so the paper goes into PMC (see below)
    • Discuss with MG the grant for the page/reprint charges (usually but not necessarily the same as the PMC)
    • For license, go for open access for non-commercial use unless prohibitively expensive
  • Tools & Resources
    • Software from the paper should be listed on the lab tools page (http://info.gersteinlab.org/Resources) & in the lab github (https://github.gersteinlab.org)
    • Make sure there exists a minimal and maximally durable distribution of code and key data as a simple tarball
    • Make sure you software links the permissions statement & has a license (MIT)
    • Make sure you have a final URL for website/github materials from above and enter it into the papers page
    • Make sure you use long-term email addresses for software contacts and a link to the lab FAQ
    • Make sure you have proper, long-term links for all files (files.gersteinlab.org, no dropbox or personal homepage links)
    • You can use the "website" field on the papers page to link your github site.
  • PMC & preprints
    • make sure journal publishes in PubMed Central (send email to editor to confirm this)
    • Do a biorxiv submission (or another equiv. preprint server)
    • use pi at gersteinlab.org for bioxriv submission
      • Link this from the papers page
      • Update bioRxiv preprint when the paper is published (wait 2-3 weeks before contacting bioRxiv - bioRxiv should automatically link it ).
  • Tweet
    • Tweet a ~200 char tweet on the paper and mention MG (@MarkGerstein), including bits of the title; you can include an image too. He will retweet.
    • You can use the lab twitter (@GersteinLab)
    • Some recent examples: 
https://twitter.com/markgerstein/status/789117961843900417 
https://twitter.com/markgerstein/status/851125314264715267
https://twitter.com/markgerstein/status/813772503063609344
  • Wikipedia
    • Try to link your paper to a relevant article on Wikipedia and edit that entry as appropriate
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