VAT/download

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Revision as of 16:12, 8 March 2011 by Lukas.habegger (Talk | contribs)
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VAT Main Page


Code

Required Software - External

  1. GSL - GNU Scientific Library
  2. BlatSuite - BLAT and a collection of utility programs. Note: these executables must be part of the PATH.
  3. GD library - The GD library is used to create an image for each gene model and its associated variants.
  4. Tabix - Tabix is generic tool that indexes position-sorted files in tab-delimited formats to facilitate fast retrieval (download). Note: these executables must be part of the PATH
  5. VCF tools - VCF tools consists of a suite of useful modules to manipulate VCF files.


Download

VAT suite consists of two components:

  1. BIOS, which is a general C library
  2. VAT, which contains the Variant Annotation Tools


Source code

A TAR ball containing the source code can be downloaded here:


Executables

Statically built binaries for UNIX can be found here:


Important Note
==============

THIS PACKAGE (RSEQtools including BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES
OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.


License information

The software package is released under the Creative Commons license (Attribution-NonCommerical).
For more details please refer to the Permissions Page on the Gerstein Lab webpage.

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