RSEQtools/code

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[http://archive.gersteinlab.org/proj/rnaseq/doc/mrf/index.html MRF] (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets.
[http://archive.gersteinlab.org/proj/rnaseq/doc/mrf/index.html MRF] (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets.
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A TAR ball that contains these two components can be downloaded here:
+
A TAR ball that contains the source code for these two components can be downloaded here:
* [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.6.tar.gz RSEQtools-0.6.tar.gz] - Last updated on 11/05/2010
* [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.6.tar.gz RSEQtools-0.6.tar.gz] - Last updated on 11/05/2010
* [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.5.tar.gz RSEQtools-0.5.tar.gz] - Initial upload
* [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.5.tar.gz RSEQtools-0.5.tar.gz] - Initial upload

Revision as of 17:05, 5 November 2010

RSEQtools Main Page


Code

Required Software - External

  1. GSL - GNU Scientific Library
  2. BlatSuite - BLAT and a collection of utility programs. Note these executables have to be part of the PATH.


Download

RSEQtools consists of two libraries: BIOS, which is a general C library, and MRF (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets.

A TAR ball that contains the source code for these two components can be downloaded here:



Installation

The components should be installed in the same order as listed above. Installation instructions can be found at the respective website.

Important Note
==============

THIS PACKAGE (RSEQtools including BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES
OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.


License information

The software package is released under the Creative Commons license (Attribution-NonCommerical).
For more details please refer to the Permissions Page on the Gerstein Lab webpage.

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