FusionSeq List of programs

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geneFusions identifies potential fusion transcript candidates from an alignment file.


geneFusions prefix minNumberOfReads 
  • Inputs: Takes an MRF file from STDIN
  • Outputs: Reports GFR to STDOUT
  • Required arguments
    • prefix - the main ID of each candidate, i.e. prefix_0001, prefix_0002, etc.
    • minNumberOfReads - the minimum number of reads required to include a candiate
  • Optional arguments
    • none

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