FusionSeq List of programs

From GersteinInfo

Revision as of 17:17, 19 August 2010 by Asboner (Talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
FusionSeq main web page
User documentation main

geneFusions

geneFusions identifies potential fusion transcript candidates from an alignment file.

Usage:

geneFusions prefix minNumberOfReads 
  • Inputs: Takes an MRF file from STDIN
  • Outputs: Reports GFR to STDOUT
  • Required arguments
    • prefix - the main ID of each candidate, i.e. prefix_0001, prefix_0002, etc.
    • minNumberOfReads - the minimum number of reads required to include a candiate
  • Optional arguments
    • none


Top
Personal tools