FusionSeq List of programs

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(Created page with '{{FusionSeqHeader}} ==== geneFusions ==== geneFusions identifies potential fusion transcript candidates from an alignment file. '''Usage''': geneFusions prefix minNumberOf…')
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Revision as of 17:17, 19 August 2010

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geneFusions

geneFusions identifies potential fusion transcript candidates from an alignment file.

Usage:

geneFusions prefix minNumberOfReads 
  • Inputs: Takes an MRF file from STDIN
  • Outputs: Reports GFR to STDOUT
  • Required arguments
    • prefix - the main ID of each candidate, i.e. prefix_0001, prefix_0002, etc.
    • minNumberOfReads - the minimum number of reads required to include a candiate
  • Optional arguments
    • none


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