Funseq
From GersteinInfo
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__TOC__ | __TOC__ | ||
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| + | =Installation= | ||
==A. Required Tools== | ==A. Required Tools== | ||
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1) Please make sure you have Perl 5 and up. Latest PERL can be downloaded [http://www.perl.org/ here]. <br> | 1) Please make sure you have Perl 5 and up. Latest PERL can be downloaded [http://www.perl.org/ here]. <br> | ||
2) Install package Parallel::ForkManager (this package is used for parallel running). The PERL library can be found [http://search.cpan.org/~szabgab/Parallel-ForkManager-1.03/lib/Parallel/ForkManager.pm here]. | 2) Install package Parallel::ForkManager (this package is used for parallel running). The PERL library can be found [http://search.cpan.org/~szabgab/Parallel-ForkManager-1.03/lib/Parallel/ForkManager.pm here]. | ||
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| + | ==C. FunSeq tool installation== | ||
| + | $ cd FUNSEQ/ | ||
| + | $ perl Makefile.PL | ||
| + | $ make | ||
| + | $ make test | ||
| + | $ make install | ||
<br> | <br> | ||
<br> | <br> | ||
Revision as of 20:34, 6 May 2013
Contents |
Installation
A. Required Tools
The following tools are REQUIRED for FunSeq:
1) Bedtools
2) Samtools
3) Tabix
4) VAT - A good installation guide for VAT can be found here.
B. PERL Requirement
1) Please make sure you have Perl 5 and up. Latest PERL can be downloaded here.
2) Install package Parallel::ForkManager (this package is used for parallel running). The PERL library can be found here.
C. FunSeq tool installation
$ cd FUNSEQ/
$ perl Makefile.PL
$ make
$ make test
$ make install
