Even more tools

From GersteinInfo

(Difference between revisions)
Jump to: navigation, search
 
(10 intermediate revisions not shown)
Line 1: Line 1:
 +
A resource may be produced without actually being published. Source code for such resources is archived through this page.
:{|class="wikitable sortable" border="1" cellspacing="0" cellpadding="10"
:{|class="wikitable sortable" border="1" cellspacing="0" cellpadding="10"
|- bgcolor="lightsteelblue"
|- bgcolor="lightsteelblue"
-
!Tool Name!!Release Date!!class="unsortable"|Description
+
!Tool Name!!Project Date!!class="unsortable"|Description
|-style="height: 100px;"
|-style="height: 100px;"
-
|style="width:15%; text-align:center;"|[http://hub.gersteinlab.org/ir-supp/ '''HUB''']||style="width:7%; text-align:center;"|2001||A tool for leveraging the structure of the semantic web to enhance information retrieval for proteomics. This tool helps Proteomics researchers to be able to quickly retrieve relevant information from the web and the biomedical literature.
+
|style="width:15%; text-align:center;"|[https://www.encodeproject.org/comparative/ '''CAPE''']||style="width:7%; text-align:center;"|2014||The transcriptome is the readout of the genome. Identifying common features in it across distant species can reveal fundamental principles. To this end, the ENCODE and modENCODE consortia have generated large amounts of matched RNA-sequencing data for human, worm and fly. Uniform processing and comprehensive annotation of these data allow comparison across metazoan phyla, extending beyond earlier within-phylum transcriptome comparisons and revealing ancient, conserved features.
|-style="height: 100px;"
|-style="height: 100px;"
-
|style="width:15%; text-align:center;"|[http://yeasthub.gersteinlab.org '''Yeasthub''']||style="width:7%; text-align:center;"|1997||A semantic web-based application which demonstrates how a life sciences data warehouse can be built using a native Resource Description Framework (RDF) data store. This data warehouse allows integration of different types of yeast genome data provided by different resources in different formats including the tabular and RDF formats.
+
|style="text-align: center;"|[http://code.google.com/p/lesseq/ '''LESSeq''']<br>[http://github.gersteinlab.org/LESSeq/ Github repo]||style="text-align:center;"|2014||Local Event-based analysis of alternative Splicing using RNA-Seq
-
 
+
-
 
+
|}
|}

Latest revision as of 19:57, 11 May 2016

A resource may be produced without actually being published. Source code for such resources is archived through this page.

Tool NameProject DateDescription
CAPE2014The transcriptome is the readout of the genome. Identifying common features in it across distant species can reveal fundamental principles. To this end, the ENCODE and modENCODE consortia have generated large amounts of matched RNA-sequencing data for human, worm and fly. Uniform processing and comprehensive annotation of these data allow comparison across metazoan phyla, extending beyond earlier within-phylum transcriptome comparisons and revealing ancient, conserved features.
LESSeq
Github repo		2014Local Event-based analysis of alternative Splicing using RNA-Seq
Retrieved from "http://info.gersteinlab.org/Even_more_tools"
Personal tools