Encode-enhancers

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(Original Data Files)
(Original Data Files)
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This page lists the ENCODE 2 enhancers
This page lists the ENCODE 2 enhancers
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== Original Data Files ==
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These files are derived from data at  
These files are derived from data at  
http://www.ebi.ac.uk/~swilder/Superclustering/concordances4  
http://www.ebi.ac.uk/~swilder/Superclustering/concordances4  
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(described in [http://papers.gersteinlab.org/papers/metatrack Yip et al, Genome Biol, 2012)])  
(described in [http://papers.gersteinlab.org/papers/metatrack Yip et al, Genome Biol, 2012)])  
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[http://homes.gersteinlab.org/Encode_enhancers/DRM_Gm12878_merged.bed DRM_Gm12878_merged.bed] - Closely derived from the original file
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== Original Data Files ==
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[http://homes.gersteinlab.org/Encode_enhancers/DRM_Gm12878_merged.bed DRM_Gm12878_merged.bed]
   
   
[http://homes.gersteinlab.org/Encode_enhancers/DRM_H1hesc_merged.bed DRM_H1hesc_merged.bed] <br>
[http://homes.gersteinlab.org/Encode_enhancers/DRM_H1hesc_merged.bed DRM_H1hesc_merged.bed] <br>

Revision as of 20:10, 27 September 2013

This page lists the ENCODE 2 enhancers


These files are derived from data at http://www.ebi.ac.uk/~swilder/Superclustering/concordances4 (described in papers: Hoffman et al, NAR, 2013; Hoffman et al, Nature Methods, 2013; and Ernst and Kellis, Nature Methods, 2012) and http://papers.gersteinlab.org/papers/metatrack (described in Yip et al, Genome Biol, 2012))

Original Data Files

DRM_Gm12878_merged.bed

DRM_H1hesc_merged.bed

DRM_Helas3_merged.bed

DRM_Hepg2_merged.bed

DRM_K562_merged.bed

Unions and Insections

DRM_union_merged.bed: Union of DRM bins merged into regions, allowing gaps of 1 bin in size

ENHANCER_CHROMHMM_SEGWAY_DRM.intersect.bed: ChromHMM/Segway enhancers that intersect with DRMs

ENHANCER_CHROMHMM_SEGWAY_DRM.union.bed: Union of all enhancers

chromhmm.segway.all_celllines.enhancer.sorted.bed

chromhmm_segway.gm12878.enhancer.bed

chromhmm_segway.h1hesc.enhancer.bed

chromhmm_segway.helas3.enhancer.bed

chromhmm_segway.hepg2.enhancer.bed

chromhmm_segway.huvec.enhancer.bed

chromhmm_segway.k562.enhancer.bed

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