CRIT/workflow

From GersteinInfo

(Difference between revisions)
Jump to: navigation, search
(Created page with '==Under Construction==')
Line 1: Line 1:
-
==Under Construction==
+
==Breast Cancer Example==
 +
 
 +
===Input Data===
 +
 
 +
p-value.xls:  The binding peaks of ER using ChIP-chip download from Myles Brown's Lab at: http://research4.dfci.harvard.edu/brownlab//datasets/index.php?dir=ER_MCF7_whole_human_genome/
 +
 
 +
ER_putative_target_genes.txt: map peak to genes, each rows is a peak; all genes associated are listed in a single row separated using "$"
 +
VeerData-ID.txt: microarray expression data for breast cancer
 +
Veer-Info.txt: sample information
 +
 
 +
UNDER CONSTRUCTION

Revision as of 20:26, 24 January 2011

Breast Cancer Example

Input Data

p-value.xls: The binding peaks of ER using ChIP-chip download from Myles Brown's Lab at: http://research4.dfci.harvard.edu/brownlab//datasets/index.php?dir=ER_MCF7_whole_human_genome/

ER_putative_target_genes.txt: map peak to genes, each rows is a peak; all genes associated are listed in a single row separated using "$" VeerData-ID.txt: microarray expression data for breast cancer Veer-Info.txt: sample information

UNDER CONSTRUCTION

Personal tools