Analysis of Lab Publications

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Overview

Below is quick analysis of lab publication patterns, showing our websites and most commonly picked journals.

Raw data is in :

Analysis-of-Journals-and-Websites-from-PapersPage-9May2010 uploaded by MG on 9 May '10

which is derived from:

http://papers.gersteinlab.org/papers/papers-ids.htm

Websites

150 Unique websites associated with lab papers (from papers.gersteinlab.org as of 9-May-2010)

   http://archive.gersteinlab.org/proj/ReSeqSim/
   http://array.mbb.yale.edu/chr22
   http://array.mbb.yale.edu/chr22/STAT/
   http://array.mbb.yale.edu/yeast/transcription/
   http://bioinfo.mbb.yale.edu/align/
   http://bioinfo.mbb.yale.edu/align/scop
   http://bioinfo.mbb.yale.edu/expression
   http://bioinfo.mbb.yale.edu/expression/codons
   http://bioinfo.mbb.yale.edu/expression/echipchip
   http://bioinfo.mbb.yale.edu/expression/interactions
   http://bioinfo.mbb.yale.edu/expression/myelopoiesis
   http://bioinfo.mbb.yale.edu/expression/neutrophil
   http://bioinfo.mbb.yale.edu/expression/prot-v-mrna
   http://bioinfo.mbb.yale.edu/expressyourself
   http://bioinfo.mbb.yale.edu/genome
   http://bioinfo.mbb.yale.edu/genome/browser
   http://bioinfo.mbb.yale.edu/genome/expression
   http://bioinfo.mbb.yale.edu/genome/foldfunc/
   http://bioinfo.mbb.yale.edu/genome/integrate/interactions/assess/
   http://bioinfo.mbb.yale.edu/genome/localize
   http://bioinfo.mbb.yale.edu/genome/MG
   http://bioinfo.mbb.yale.edu/genome/phenotypes
   http://bioinfo.mbb.yale.edu/genome/pseudogene/
   http://bioinfo.mbb.yale.edu/genome/pseudogene/human-cyc
   http://bioinfo.mbb.yale.edu/genome/pseudogene/motif/
   http://bioinfo.mbb.yale.edu/genome/thermophile
   http://bioinfo.mbb.yale.edu/genome/tms
   http://bioinfo.mbb.yale.edu/genome/trees
   http://bioinfo.mbb.yale.edu/genome/worm
   http://bioinfo.mbb.yale.edu/genome/worm/pseudogene
   http://bioinfo.mbb.yale.edu/genome/yeast/chip
   http://bioinfo.mbb.yale.edu/genome/yeast/orfome
   http://bioinfo.mbb.yale.edu/geometry
   http://bioinfo.mbb.yale.edu/hyper/mbg/AvgCore/
   http://bioinfo.mbb.yale.edu/hyper/mbg/AvgCore/ismb96/
   http://bioinfo.mbb.yale.edu/hyper/mbg/CoarseSurf/
   http://bioinfo.mbb.yale.edu/hyper/mbg/ISMB-94-60/
   http://bioinfo.mbb.yale.edu/hyper/mbg/Purcell/
   http://bioinfo.mbb.yale.edu/hyper/mbg/SurfaceVolumes/
   http://bioinfo.mbb.yale.edu/labdb/datamine
   http://bioinfo.mbb.yale.edu/MolMovDB
   http://bioinfo.mbb.yale.edu/MolMovDB/geometry/membrane
   http://bioinfo.mbb.yale.edu/network/essen
   http://bioinfo.mbb.yale.edu/proteinchip
   http://bioinfo.mbb.yale.edu/regulation/TIG
   http://bioinfo.mbb.yale.edu/tmstat/
   http://bioinfo.mbb.yale.edu/what-is-it
   http://breakptr.gersteinlab.org
   http://coevolution.gersteinlab.org/coevolution/
   http://DART.gersteinlab.org
   http://dart.gersteinlab.org/ENCODE/TR/
   http://dart.gersteinlab.org/rice/
   http://encode.gersteinlab.org
   http://genecensus.org
   http://genecensus.org/20
   http://genecensus.org/expression/cluster
   http://genecensus.org/expression/interactions
   http://genecensus.org/expression/translatome
   http://genecensus.org/integrate/interactions
   http://genecensus.org/intint
   http://genecensus.org/localize
   http://genecensus.org/pseudogene
   http://genecensus.org/TopNet
   http://genecensus.org/yeast/orfome/new-genes
   http://geometry.molmovdb.org/3v/
   http://geometry.molmovdb.org/NucProt/
   http://helix.gersteinlab.org
   http://hub.gersteinlab.org/
   http://hub.gersteinlab.org/ir-supp
   http://interolog.gersteinlab.org/
   http://mining.nesg.org
   http://modencode.org
   http://molmovdb.org
   http://molmovdb.org/cgi-bin/submit-flexoracle.cgi
   http://molmovdb.org/cosb/
   http://molmovdb.org/geometry/3dhmm
   http://molmovdb.org/HAG/
   http://molmovdb.org/molmovdb/cocb
   http://molmovdb.org/nma/
   http://ndbserver.rutgers.edu/NDB/archives
   http://nesg.org
   http://networks.gersteinlab.org/intint/
   http://networks.gersteinlab.org/metagenomics
   http://networks.gersteinlab.org/network/netcomp/
   http://networks.gersteinlab.org/phosphorylome
   http://networks.gersteinlab.org/tse/
   http://networks.gersteinlab.org/tyna/
   http://papers.gersteinlab.org/e-print/amsci
   http://papers.gersteinlab.org/e-print/dbcopyright/extra/web/index.html
   http://papers.gersteinlab.org/e-print/sciam2/
   http://partslist.org
   http://partslist.org/func
   http://partslist.org/powerlaw
   http://plants.gersteinlab.org/
   http://prokaryotes.pseudogene.org/
   http://proteomics.gersteinlab.org
   http://pseudofam.pseudogene.org
   http://pseudogene.org
   http://pseudogene.org/ENCODE
   http://pseudogene.org/glycolysis/
   http://pseudogene.org/nr/
   http://pseudogene.org/polyo
   http://pseudogene.org/pseudoPipeD/index.html
   http://pubnet.gersteinlab.org/
   http://pubnet.gersteinlab.org/rnai/
   http://purelight.biology.yale.edu:8080/servlets-examples/procat.html
   http://sandy.topnet.gersteinlab.org/
   http://sin.gersteinlab.org
   http://spine.mbb.yale.edu/deletion/
   http://stonehinge.molmovdb.org
   http://sv.gersteinlab.org
   http://sv.gersteinlab.org/breakseq/
   http://tilescope.gersteinlab.org
   http://tiling.gersteinlab.org
   http://tiling.gersteinlab.org/hmm/
   http://tiling.gersteinlab.org/platformcmp/
   http://tiling.gersteinlab.org/pseudomedian/
   http://tiling.gersteinlab.org/sequence_effects/
   http://topnet.gersteinlab.org/clique/
   http://transcriptome.gersteinlab.org/
   http://wiki.gersteinlab.org/pubinfo/Ortholog_Resources
   http://wiki.gersteinlab.org/pubinfo/What_is_a_gene
   http://www-smi.stanford.edu/projects/helix/LPFC
   http://www.cbio.mskcc.org/~jansen/comb/
   http://www.cs.concordia.ca/~baker/SW-RKDLS-May-2006.htm
   http://www.dis.uniroma1.it/~algo02
   http://www.elsevier.com/inca/publications/store/4/0/8/?menu=cont&label=Table
   http://www.gersteinlab.org/proj/BoCaTFBS/
   http://www.gersteinlab.org/proj/bottleneck/
   http://www.gersteinlab.org/proj/chip-seq-simu/
   http://www.gersteinlab.org/proj/funcsim/
   http://www.gersteinlab.org/proj/funnygene/
   http://www.gersteinlab.org/proj/gpcrsnp
   http://www.gersteinlab.org/proj/microrna
   http://www.gersteinlab.org/proj/nethierarchy/
   http://www.gersteinlab.org/proj/netpossel/
   http://www.gersteinlab.org/proj/PeakSeq
   http://www.gersteinlab.org/proj/phenome/
   http://www.gersteinlab.org/proj/predess
   http://www.gersteinlab.org/proj/regnetdiverge
   http://www.gersteinlab.org/proj/sdcnvcorr/
   http://www.med.yale.edu/microarray
   http://www.nature.com/nature/debates/e-access
   http://www.nature.com/nsb/structural_genomics
   http://www.pseudogene.org/indel-nar/
   http://www.pseudogene.org/ribosomal-protein
   http://www.the-scientist.com/2006/9/1/25/1/
   http://www2.molmovdb.org/wiki/info/index.php/Protein_Packing
   http://yeasthub.gersteinlab.org
   http://zerlina.ingentaselect.com/vl=9024539/cl=83/nw=1/rpsv/cw/mal/10665277/v11n4/contp1-1.htm

Journals

Number of lab publications in 67 Journals (from papers.gersteinlab.org as of 9-May-2010)

   	27	Genome Res
   	27	J Mol Biol
   	27	Nucleic Acids Res
   	19	Genome Biol
   	17	Bioinformatics
   	17	Science
   	16	Proc Natl Acad Sci U S A
   	13	Nature
   	12	Genes Dev
   	10	PLoS Comput Biol
   	10	Proteins
   	9	BMC Bioinformatics
   	8	BMC Genomics
   	7	Nat Biotechnol
   	7	Trends Genet
   	6	Curr Opin Struct Biol
   	6	Protein Sci
   	4	Blood
   	4	Protein Eng
   	3	Methods Enzymol
   	3	PLoS One
   	2	Am J Bioeth
   	2	Annu Rev Biochem
   	2	Cell
   	2	Cold Spring Harb Symp Quant Biol
   	2	Curr Opin Chem Biol
   	2	Dev Cell
   	2	FEBS Lett
   	2	Funct Integr Genomics
   	2	J Mol Evol
   	2	Mol Cell Proteomics
   	2	Mol Syst Biol
   	2	Nat Struct Biol
   	2	Proc Int Conf Intell Syst Mol Biol
   	2	Sci Am
   	1	Biochemistry
   	1	Biotechniques
   	1	Comput Appl Biosci
   	1	Curr Opin Genet Dev
   	1	Curr Opin Microbiol
   	1	Drug Discov Today
   	1	EMBO J
   	1	Eukaryot Cell
   	1	FEMS Microbiol Rev
   	1	Fold Des
   	1	J Mol Graph
   	1	J Mol Microbiol Biotechnol
   	1	J Physiol
   	1	J Proteome Res
   	1	J Struct Funct Genomics
   	1	J Virol
   	1	Methods Inf Med
   	1	Mol Biol Evol
   	1	N Engl J Med
   	1	Neoplasia
   	1	Pac Symp Biocomput
   	1	Pharmacogenomics
   	1	Pharmacogenomics J
   	1	Plant Mol Biol
   	1	Plant Physiol
   	1	PLoS Genet
   	1	Proc AMIA Symp
   	1	Prog Biophys Mol Biol
   	1	Q Rev Biophys
   	1	Sci Signal
   	1	Structure
   	1	Trends Biochem Sci
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