Resources Related to Hierarchies

We have investigated the hierarchical organization of networks in a series of publications.

Human hierarchy based on ChIP-Seq data from ENCODE http://papers.gersteinlab.org/papers/encodenets http://encodenets.gersteinlab.org/

Worm and Fly hierarchies constructed from modENCODE ChIP-Seq data http://papers.gersteinlab.org/papers/mirnet http://papers.gersteinlab.org/papers/wormawg

Collaboration between middle level regulators in a hierarchy http://papers.gersteinlab.org/papers/nethier http://info.gersteinlab.org/Hierarchy

Rewiring in hierarchy http://papers.gersteinlab.org/papers/hier-rewiring http://info.gersteinlab.org/Rewiring_hierarchy

Hierarchy in Yeast transcriptional regulatory network http://papers.gersteinlab.org/papers/nethierarchy/ http://www.gersteinlab.org/proj/nethierarchy

Bacterial hierarchy and call graph http://papers.gersteinlab.org/papers/callgraph http://archive.gersteinlab.org/proj/call_graph/Genome_and_OS.html