Funseq

Installation

A. Required Tools

The following tools are REQUIRED for FunSeq:
1) Bedtools
2) Samtools
3) Tabix
4) VAT - A good installation guide for VAT can be found here.

B. PERL Requirement

1) Please make sure you have Perl 5 and up. Latest PERL can be downloaded here.
2) Install package Parallel::ForkManager (this package is used for parallel running). The PERL library can be found here.

C. FunSeq tool installation

$ cd FUNSEQ/ $ perl Makefile.PL $ make $ make test $ make install