Overview of the 2012 ENCODE Rollout
The rollout for the ENCODE consortium (Human Genome Annotation) papers occurred in early fall 2012. This was the culmination of a decade of work in the ENCODE scaleup, the ENCODE pilot project, and modENCODE.
Papers
- Papers related to the actual ENCODE rollout
http://papers.gersteinlab.org/subject/encoderollout
- Listing of ENCODE and modENCODE "rollout" papers from the ENCODE pilot and modENCODE rollouts
http://papers.gersteinlab.org/subject/encodecore
- Other ENCODE associated papers
http://papers.gersteinlab.org/subject/otherencodepapers
- Gencode Pseudogene work
http://papers.gersteinlab.org/subject/encode-pgenes
Press
- Times article on ENCODE and other key articles that describe the lab's work on the rollout
- More articles about the ENCODE rollout ( subset of them specifically mentioning the lab) and OpenHelix Blog entry that has lots of press links
- Yale Press Releases on ENCODE (written by Bill Hathaway), which includes Schematic showing key point of ENCODE networks analysis: annotation to hairball to interpretable hierarchy
Talks
- Slide pack on networks and pseudogenes (pdf & ppt):
- Another slide pack containing information on statistical models relating output expression to genomic inputs (pdf & ppt):
- Finally, here's a link to the modENCODE symposium, which has a video
containing bits of the talks above: http://lectures.gersteinlab.org/summary/Insights_from_Worm_modENCODE_Human_Applicable--i0modsymp-20120620/
Subway Map
We have created a subway map figure showing the overall collaboration in the consortium. There are now coauthor networks labeled/colored by both country and state.
http://homes.gersteinlab.org/people/rar62/subwaymap/SubwayMap8_16_12.pdf
https://docs.google.com/spreadsheet/ccc?key=0AvRr07RHaF5cdFZlOFJ1YmdOT2pUM1VEODM1bE5CRHc#gid=0
Easy to Read Introductory Papers
http://papers.gersteinlab.org/papers/sciam2
http://papers.gersteinlab.org/papers/amsci
Grants
We had 3 NIH ENCODE grants :
GENCODE (NIH-encode-pgenes): http://papers.gersteinlab.org/subject/encode-pgenes
The DAC (NIH-encode-DAC): http://projectreporter.nih.gov/project_info_description.cfm?aid=8107695
The ENCODE "chip center" (NIH-encode-chip) : http://projectreporter.nih.gov/project_info_description.cfm?aid=8325805
In addition the original pilot grant : http://papers.gersteinlab.org/subject/encode + http://encode.gersteinlab.org
Misc
Article about how CT is aiming to become a genomics hub. Adjacent to the story was a timeline highlighting the major genomic achievements in the state.
An article in Spanish on the rollout.