VAT/dataSets
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Contents |
Data sets
1000 Genomes Project
Low coverage samples from the 1000 Genomes Pilot Project
- Data files: - Source: pilot_data, release: 2010_07, FTP: ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/ - Indels - CEU.low_coverage.2010_07.indel.genotypes.vcf.gz - JPTCHB.low_coverage.2010_07.indel.genotypes.vcf.gz - YRI.low_coverage.2010_07.indel.genotypes.vcf.gz - SNPs - CEU.low_coverage.2010_07.genotypes.vcf.gz - CHBJPT.low_coverage.2010_07.genotypes.vcf.gz - YRI.low_coverage.2010_07.genotypes.vcf.gz - Annotation file - GENCODE (version 3b, hg18) using CDS elements where gene_type = protein_coding and transcript_type = protein_coding - Results - VAT
Low coverage samples from the 1000 Genomes Pilot Project
- Data files:
- Indels - ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/CEU.low_coverage.2010_07.indel.genotypes.vcf.gz - ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/JPTCHB.low_coverage.2010_07.indel.genotypes.vcf.gz - ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/YRI.low_coverage.2010_07.indel.genotypes.vcf.gz - SNPs - ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/CEU.low_coverage.2010_07.genotypes.vcf.gz - ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/CHBJPT.low_coverage.2010_07.genotypes.vcf.gz - ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/YRI.low_coverage.2010_07.genotypes.vcf.gz - Annotation file - GENCODE (version 3b, hg18) using CDS elements where gene_type = protein_coding and transcript_type = protein_coding - Results - VAT