VAT/dataSets

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	=== 1000 Genomes Project ===		=== 1000 Genomes Project ===
-	==== Low coverage samples from the Pilot Project ====	+	# ==== Low coverage samples from the Pilot Project ====
	===== Inputs =====		===== Inputs =====

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Revision as of 17:56, 8 March 2011

VAT Main Page

Contents 1 Preprocessed data sets 1.1 1000 Genomes Project 1.1.1 Inputs 1.1.2 Analysis results

Preprocessed data sets

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1000 Genomes Project

1. ==== Low coverage samples from the Pilot Project ====

Inputs

Data files
  '-Indels
  |    '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/CEU.low_coverage.2010_07.indel.genotypes.vcf.gz
  |    '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/JPTCHB.low_coverage.2010_07.indel.genotypes.vcf.gz
  |    '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/YRI.low_coverage.2010_07.indel.genotypes.vcf.gz
  '-SNPs
       '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/CEU.low_coverage.2010_07.genotypes.vcf.gz
       '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/CHBJPT.low_coverage.2010_07.genotypes.vcf.gz
       '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/YRI.low_coverage.2010_07.genotypes.vcf.gz
 Annotation file
   '- GENCODE (version 3b, hg18) using CDS elements where gene_type = protein_coding and transcript_type = protein_coding

Analysis results