RSEQtools/code: Difference between revisions
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[http://archive.gersteinlab.org/proj/rnaseq/doc/mrf/index.html MRF] (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets. | [http://archive.gersteinlab.org/proj/rnaseq/doc/mrf/index.html MRF] (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets. | ||
A TAR ball that contains these two components can be downloaded [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.5.tar.gz | A TAR ball that contains these two components can be downloaded here: | ||
* [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.5.tar.gz RSEQtools-0.5.tar.gz] | |||
<br> | <br> | ||
Revision as of 17:03, 5 November 2010
Code
Required Software - External
- GSL - GNU Scientific Library
- BlatSuite - BLAT and a collection of utility programs. Note these executables have to be part of the PATH.
Download
RSEQtools consists of two libraries: BIOS, which is a general C library, and MRF (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets.
A TAR ball that contains these two components can be downloaded here:
Installation
The components should be installed in the same order as listed above. Installation instructions can be found at the respective website.
Important Note ============== THIS PACKAGE (RSEQtools including BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
License information
The software package is released under the Creative Commons license (Attribution-NonCommerical).
For more details please refer to the Permissions Page on the Gerstein Lab webpage.
