Encode-enhancers: Difference between revisions
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These files are derived from data at | These files are derived from data at | ||
http://www.ebi.ac.uk/~swilder/Superclustering/concordances4 | http://www.ebi.ac.uk/~swilder/Superclustering/concordances4 | ||
(described in papers: [http://www.ncbi.nlm.nih.gov/pubmed/23221638 Hoffman et al, NAR, 2013;] ) | (described in papers: [http://www.ncbi.nlm.nih.gov/pubmed/23221638 Hoffman et al, NAR, 2013;] [http://www.ncbi.nlm.nih.gov/pubmed/22426492 Hoffman et al, Nature Methods, 2013;] and [http://www.ncbi.nlm.nih.gov/pubmed/22373907 Ernst and Kellis, Nature Methods, 2012]) | ||
and | and | ||
http://papers.gersteinlab.org/papers/metatrack | http://papers.gersteinlab.org/papers/metatrack | ||
Revision as of 20:06, 27 September 2013
This page lists the ENCODE 2 enhancers
Original Data Files
These files are derived from data at http://www.ebi.ac.uk/~swilder/Superclustering/concordances4 (described in papers: Hoffman et al, NAR, 2013; Hoffman et al, Nature Methods, 2013; and Ernst and Kellis, Nature Methods, 2012) and http://papers.gersteinlab.org/papers/metatrack (described in this paper)
DRM_Gm12878_merged.bed - Closely derived from the original file
Unions and Insections
DRM_union_merged.bed: Union of DRM bins merged into regions, allowing gaps of 1 bin in size
ENHANCER_CHROMHMM_SEGWAY_DRM.intersect.bed: ChromHMM/Segway enhancers that intersect with DRMs
ENHANCER_CHROMHMM_SEGWAY_DRM.union.bed: Union of all enhancers
chromhmm.segway.all_celllines.enhancer.sorted.bed
chromhmm_segway.gm12878.enhancer.bed
chromhmm_segway.h1hesc.enhancer.bed
chromhmm_segway.helas3.enhancer.bed
chromhmm_segway.hepg2.enhancer.bed
