Encode-enhancers: Difference between revisions
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== Data Files == | == Data Files == | ||
Here you can find the coordinates of EncodeII enhancers. | |||
These files are derived from data at | |||
http://www.ebi.ac.uk/~swilder/Superclustering/concordances4/ | |||
and | |||
http://homes.gersteinlab.org/people/yy222/meta/ | |||
[http://homes.gersteinlab.org/Encode_enhancers/DRM_Gm12878_merged.bed DRM_Gm12878_merged.bed] <br> | [http://homes.gersteinlab.org/Encode_enhancers/DRM_Gm12878_merged.bed DRM_Gm12878_merged.bed] <br> | ||
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[http://homes.gersteinlab.org/Encode_enhancers/DRM_K562_merged.bed DRM_K562_merged.bed] <br> | [http://homes.gersteinlab.org/Encode_enhancers/DRM_K562_merged.bed DRM_K562_merged.bed] <br> | ||
[http://homes.gersteinlab.org/Encode_enhancers/DRM_union_merged.bed DRM_union_merged.bed] <br> | [http://homes.gersteinlab.org/Encode_enhancers/DRM_union_merged.bed DRM_union_merged.bed]: Union of DRM bins merged into regions, allowing gaps of 1 bin in size <br> | ||
[http://homes.gersteinlab.org/Encode_enhancers/ENHANCER_CHROMHMM_SEGWAY_DRM.intersect.bed ENHANCER_CHROMHMM_SEGWAY_DRM.intersect.bed] <br> | [http://homes.gersteinlab.org/Encode_enhancers/ENHANCER_CHROMHMM_SEGWAY_DRM.intersect.bed ENHANCER_CHROMHMM_SEGWAY_DRM.intersect.bed]: ChromHMM/Segway enhancers that intersect with DRMs <br> | ||
[http://homes.gersteinlab.org/Encode_enhancers/ENHANCER_CHROMHMM_SEGWAY_DRM.union.bed ENHANCER_CHROMHMM_SEGWAY_DRM.union.bed] <br> | [http://homes.gersteinlab.org/Encode_enhancers/ENHANCER_CHROMHMM_SEGWAY_DRM.union.bed ENHANCER_CHROMHMM_SEGWAY_DRM.union.bed]: Union of all enhancers <br> | ||
[http://homes.gersteinlab.org/Encode_enhancers/chromhmm.segway.all_celllines.enhancer.sorted.bed chromhmm.segway.all_celllines.enhancer.sorted.bed ] <br> | [http://homes.gersteinlab.org/Encode_enhancers/chromhmm.segway.all_celllines.enhancer.sorted.bed chromhmm.segway.all_celllines.enhancer.sorted.bed ] <br> | ||
Revision as of 23:37, 23 September 2013
This page lists the ENCODE 2 enhancers
Data Files
Here you can find the coordinates of EncodeII enhancers. These files are derived from data at http://www.ebi.ac.uk/~swilder/Superclustering/concordances4/ and http://homes.gersteinlab.org/people/yy222/meta/
DRM_union_merged.bed: Union of DRM bins merged into regions, allowing gaps of 1 bin in size
ENHANCER_CHROMHMM_SEGWAY_DRM.intersect.bed: ChromHMM/Segway enhancers that intersect with DRMs
ENHANCER_CHROMHMM_SEGWAY_DRM.union.bed: Union of all enhancers
chromhmm.segway.all_celllines.enhancer.sorted.bed
chromhmm_segway.gm12878.enhancer.bed
chromhmm_segway.h1hesc.enhancer.bed
chromhmm_segway.helas3.enhancer.bed
chromhmm_segway.hepg2.enhancer.bed
