Hierarchy
From GersteinInfo
| Line 15: | Line 15: | ||
''' | ''' | ||
| - | '''The regulatory network for [ | + | '''The regulatory network for [/nfs/archive/html/proj/Hierarchy_Rewiring/Yeast_reg.txt Yeast] and [/nfs/archive/html/proj/Hierarchy_Rewiring/Ecoli_reg.txt ''E. coli''].''' The file is in a tab-delimited format with the regulator followed by the target in the same line. For E. coli, the last column also list the type of regulation: "+" for positive, "-" for negative and "+-" for dual regulation. |
| Line 23: | Line 23: | ||
|- | |- | ||
! Number of regulatory interactions | ! Number of regulatory interactions | ||
| - | | | + | | 12873 || 3123 |
|- | |- | ||
! Number of Regulators | ! Number of Regulators | ||
| - | | | + | | 288 |
| - | | | + | | 143 |
|- | |- | ||
! Number of Targets | ! Number of Targets | ||
| - | | | + | | 4410 |
| - | | | + | | 1420 |
|- | |- | ||
! Number of Inter-Regulator interactions | ! Number of Inter-Regulator interactions | ||
| - | | | + | | 632 |
| - | | | + | | 220 |
|} | |} | ||
Revision as of 13:10, 5 July 2010
Information page for the article:
by Nitin Bhardwaj, Philip M. Kim and Mark B. Gerstein
Please cite the above article if usage of the following date results in a publication.
Data:
The regulatory network for [/nfs/archive/html/proj/Hierarchy_Rewiring/Yeast_reg.txt Yeast] and [/nfs/archive/html/proj/Hierarchy_Rewiring/Ecoli_reg.txt E. coli]. The file is in a tab-delimited format with the regulator followed by the target in the same line. For E. coli, the last column also list the type of regulation: "+" for positive, "-" for negative and "+-" for dual regulation.
| Yeast | E. coli | |
|---|---|---|
| Number of regulatory interactions | 12873 | 3123 |
| Number of Regulators | 288 | 143 |
| Number of Targets | 4410 | 1420 |
| Number of Inter-Regulator interactions | 632 | 220 |
Assignment into hierarchies for Yeast and E. coli.
Changes in hierarchies:
Indirect Targets and Number of targets vs position in the hierarchy (in one of the four levels) for E. coli and Yeast.
Effects of Overexpression
