Hierarchy

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by Nitin Bhardwaj, Philip M. Kim and Mark B. Gerstein

Please cite the above article if usage of the following date results in a publication.

Data:

The regulatory network for Yeast and E. coli.

Properties of the regulatory networks used

	Yeast	E. coli
Number of regulatory interactions	Cell 2	Cell 3
Number of Regulators	Cell B	Cell C
Number of Targets	Cell B	Cell C
Number of Inter-Regulator interactions	Cell B	Cell C

Assignment into hierarchies for Yeast and E. coli.

Changes in hierarchies:

Indirect Targets Number of targets vs position in the hierarchy (in one of the four levels) for E. coli and Yeast.

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An Example showing indirect targets of node 9.

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Indirect targets for E. coli and hierarchical levels

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Indirect targets for Yeast and hierarchical levels

Effects of Overexpression