VAT/dataSets
From GersteinInfo
(Difference between revisions)
| Line 10: | Line 10: | ||
==== Low coverage samples from the Pilot Project ==== | ==== Low coverage samples from the Pilot Project ==== | ||
| + | |||
| + | ===== Inputs ===== | ||
Data files | Data files | ||
| Line 22: | Line 24: | ||
Annotation file | Annotation file | ||
'- [ftp://ftp.sanger.ac.uk/pub/gencode/release_3b/gencode.v3b.annotation.NCBI36.gtf.gz GENCODE (version 3b, hg18)] using CDS elements where ''gene_type = protein_coding'' and ''transcript_type = protein_coding'' | '- [ftp://ftp.sanger.ac.uk/pub/gencode/release_3b/gencode.v3b.annotation.NCBI36.gtf.gz GENCODE (version 3b, hg18)] using CDS elements where ''gene_type = protein_coding'' and ''transcript_type = protein_coding'' | ||
| + | |||
| + | ===== Analysis results ===== | ||
Revision as of 17:54, 8 March 2011
Contents |
Preprocessed data sets
1000 Genomes Project
Low coverage samples from the Pilot Project
Inputs
Data files '-Indels | '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/CEU.low_coverage.2010_07.indel.genotypes.vcf.gz | '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/JPTCHB.low_coverage.2010_07.indel.genotypes.vcf.gz | '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/YRI.low_coverage.2010_07.indel.genotypes.vcf.gz '-SNPs '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/CEU.low_coverage.2010_07.genotypes.vcf.gz '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/CHBJPT.low_coverage.2010_07.genotypes.vcf.gz '- ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/YRI.low_coverage.2010_07.genotypes.vcf.gz Annotation file '- GENCODE (version 3b, hg18) using CDS elements where gene_type = protein_coding and transcript_type = protein_coding
