VAT/dataSets
From GersteinInfo
(Difference between revisions)
| Line 11: | Line 11: | ||
==== Low coverage samples from the Pilot Project ==== | ==== Low coverage samples from the Pilot Project ==== | ||
| - | + | Data files | |
| - | + | * Indels | |
| - | + | ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/CEU.low_coverage.2010_07.indel.genotypes.vcf.gz | |
| - | + | ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/JPTCHB.low_coverage.2010_07.indel.genotypes.vcf.gz | |
| - | + | ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/YRI.low_coverage.2010_07.indel.genotypes.vcf.gz | |
| - | + | * SNPs | |
| - | + | ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/CEU.low_coverage.2010_07.genotypes.vcf.gz | |
| - | + | ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/CHBJPT.low_coverage.2010_07.genotypes.vcf.gz | |
| - | + | ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/YRI.low_coverage.2010_07.genotypes.vcf.gz | |
| - | + | Annotation file | |
| - | + | * [ftp://ftp.sanger.ac.uk/pub/gencode/release_3b/gencode.v3b.annotation.NCBI36.gtf.gz GENCODE (version 3b, hg18)] using CDS elements where ''gene_type = protein_coding'' and transcript_type = protein_coding'' | |
Revision as of 17:48, 8 March 2011
Contents |
Preprocessed data sets
1000 Genomes Project
Low coverage samples from the Pilot Project
Data files * Indels ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/CEU.low_coverage.2010_07.indel.genotypes.vcf.gz ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/JPTCHB.low_coverage.2010_07.indel.genotypes.vcf.gz ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/indels/YRI.low_coverage.2010_07.indel.genotypes.vcf.gz * SNPs ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/CEU.low_coverage.2010_07.genotypes.vcf.gz ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/CHBJPT.low_coverage.2010_07.genotypes.vcf.gz ** ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/YRI.low_coverage.2010_07.genotypes.vcf.gz Annotation file * GENCODE (version 3b, hg18) using CDS elements where gene_type = protein_coding and transcript_type = protein_coding
