Encode-enhancers: Difference between revisions
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This page lists the ENCODE 2 enhancers | This page lists the ENCODE 2 enhancers | ||
These files are derived from data at | These files are derived from data at | ||
http://www.ebi.ac.uk/~swilder/Superclustering/concordances4 | http://www.ebi.ac.uk/~swilder/Superclustering/concordances4 | ||
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(described in [http://papers.gersteinlab.org/papers/metatrack Yip et al, Genome Biol, 2012)]) | (described in [http://papers.gersteinlab.org/papers/metatrack Yip et al, Genome Biol, 2012)]) | ||
[http://homes.gersteinlab.org/Encode_enhancers/DRM_Gm12878_merged.bed DRM_Gm12878_merged.bed] | == Original Data Files == | ||
[http://homes.gersteinlab.org/Encode_enhancers/DRM_Gm12878_merged.bed DRM_Gm12878_merged.bed] | |||
[http://homes.gersteinlab.org/Encode_enhancers/DRM_H1hesc_merged.bed DRM_H1hesc_merged.bed] <br> | [http://homes.gersteinlab.org/Encode_enhancers/DRM_H1hesc_merged.bed DRM_H1hesc_merged.bed] <br> | ||
Revision as of 20:10, 27 September 2013
This page lists the ENCODE 2 enhancers
These files are derived from data at
http://www.ebi.ac.uk/~swilder/Superclustering/concordances4
(described in papers: Hoffman et al, NAR, 2013; Hoffman et al, Nature Methods, 2013; and Ernst and Kellis, Nature Methods, 2012)
and
http://papers.gersteinlab.org/papers/metatrack
(described in Yip et al, Genome Biol, 2012))
Original Data Files
Unions and Insections
DRM_union_merged.bed: Union of DRM bins merged into regions, allowing gaps of 1 bin in size
ENHANCER_CHROMHMM_SEGWAY_DRM.intersect.bed: ChromHMM/Segway enhancers that intersect with DRMs
ENHANCER_CHROMHMM_SEGWAY_DRM.union.bed: Union of all enhancers
chromhmm.segway.all_celllines.enhancer.sorted.bed
chromhmm_segway.gm12878.enhancer.bed
chromhmm_segway.h1hesc.enhancer.bed
chromhmm_segway.helas3.enhancer.bed
chromhmm_segway.hepg2.enhancer.bed
