Encode-enhancers: Difference between revisions
| Line 5: | Line 5: | ||
These files are derived from data at | These files are derived from data at | ||
http://www.ebi.ac.uk/~swilder/Superclustering/concordances4 | http://www.ebi.ac.uk/~swilder/Superclustering/concordances4 | ||
( | (described in papers: X, Y, Z) | ||
and | and | ||
http://papers.gersteinlab.org/papers/metatrack | http://papers.gersteinlab.org/papers/metatrack | ||
( | (described in this [http://papers.gersteinlab.org/papers/metatrack paper]) | ||
[http://homes.gersteinlab.org/Encode_enhancers/DRM_Gm12878_merged.bed DRM_Gm12878_merged.bed] - Closely derived from the original file | [http://homes.gersteinlab.org/Encode_enhancers/DRM_Gm12878_merged.bed DRM_Gm12878_merged.bed] - Closely derived from the original file | ||
Revision as of 18:33, 26 September 2013
This page lists the ENCODE 2 enhancers
Original Data Files
These files are derived from data at http://www.ebi.ac.uk/~swilder/Superclustering/concordances4 (described in papers: X, Y, Z) and http://papers.gersteinlab.org/papers/metatrack (described in this paper)
DRM_Gm12878_merged.bed - Closely derived from the original file
Unions and Insections
DRM_union_merged.bed: Union of DRM bins merged into regions, allowing gaps of 1 bin in size
ENHANCER_CHROMHMM_SEGWAY_DRM.intersect.bed: ChromHMM/Segway enhancers that intersect with DRMs
ENHANCER_CHROMHMM_SEGWAY_DRM.union.bed: Union of all enhancers
chromhmm.segway.all_celllines.enhancer.sorted.bed
chromhmm_segway.gm12878.enhancer.bed
chromhmm_segway.h1hesc.enhancer.bed
chromhmm_segway.helas3.enhancer.bed
chromhmm_segway.hepg2.enhancer.bed
