Overview of the 2012 ENCODE Rollout: Difference between revisions
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The rollout for the ENCODE consortium (Human Genome Annotation) papers occurred in early fall 2012. | The rollout for the ENCODE consortium (Human Genome Annotation) papers occurred in early fall 2012. This was the culmination of a decade of work in the ENCODE scaleup, the ENCODE pilot project, and modENCODE. | ||
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http://papers.gersteinlab.org/subject/encode | http://papers.gersteinlab.org/subject/encode | ||
== Press == | |||
* | * [http://linkstream2.gerstein.info/tag/x78qtecore/ Articles that describe the Gerstein lab's work on Rollout] | ||
http:// | |||
* [http://linkstream2.gerstein.info/tag/prencroll0mg Articles about the ENCODE rollout] | * [http://linkstream2.gerstein.info/tag/prencroll0mg Articles about the ENCODE rollout] | ||
* [http://blog.openhelix.eu/?p=13613 ENCODE floods the news networks…] - The OpenHelix Blog | * [http://blog.openhelix.eu/?p=13613 ENCODE floods the news networks…] - The OpenHelix Blog | ||
* [http://archive.gersteinlab.org/mark/out/log/2012/09.09/encoderollout-PR/P038MAD_SOC06092012038_1.pdf An article in Spanish] | * [http://archive.gersteinlab.org/mark/out/log/2012/09.09/encoderollout-PR/P038MAD_SOC06092012038_1.pdf An article in Spanish] | ||
* [http://archive.gersteinlab.org/mark/out/log/2012/08.28/diag/encodenets--presss-release-schematic--Diagram-4-1.pdf Schematic] showing key point of ENCODE networks analysis: annotation to hairball to interpretable hierarchy | * [http://archive.gersteinlab.org/mark/out/log/2012/08.28/diag/encodenets--presss-release-schematic--Diagram-4-1.pdf Schematic] showing key point of ENCODE networks analysis: annotation to hairball to interpretable hierarchy | ||
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http://papers.gersteinlab.org/papers/amsci | http://papers.gersteinlab.org/papers/amsci | ||
== Misc == | |||
Yale website for ENCODE pilot project: http://encode.gersteinlab.org/ | |||
Revision as of 02:47, 30 September 2012
The rollout for the ENCODE consortium (Human Genome Annotation) papers occurred in early fall 2012. This was the culmination of a decade of work in the ENCODE scaleup, the ENCODE pilot project, and modENCODE.
Papers
- Papers related to the actual ENCODE rollout
http://papers.gersteinlab.org/subject/encoderollout
- Listing of ENCODE and modENCODE "rollout" papers from the ENCODE pilot and modENCODE rollouts
http://papers.gersteinlab.org/subject/encodecore
- Other ENCODE associated papers
http://papers.gersteinlab.org/subject/otherencodepapers
- Gencode Pseudogene work
http://papers.gersteinlab.org/subject/encode-pgenes
- Original Pilot Grant Papers
http://papers.gersteinlab.org/subject/encode
Press
- Articles about the ENCODE rollout
- ENCODE floods the news networks… - The OpenHelix Blog
- An article in Spanish
- Schematic showing key point of ENCODE networks analysis: annotation to hairball to interpretable hierarchy
- 3 Yale Press Releases on ENCODE (written by Bill Hathaway)
Talks
- Slide pack on networks and pseudogenes (pdf & ppt):
- Another slide pack containing information on statistical models relating output expression to genomic inputs (pdf & ppt):
- Finally, here's a link to the modENCODE symposium, which has a video
containing bits of the talks above: http://lectures.gersteinlab.org/summary/Insights_from_Worm_modENCODE_Human_Applicable--i0modsymp-20120620/
Subway Map
We have created a subway map figure showing the overall collaboration in the consortium. There are now coauthor networks labeled/colored by both country and state.
http://homes.gersteinlab.org/people/rar62/subwaymap/SubwayMap8_16_12.pdf
https://docs.google.com/spreadsheet/ccc?key=0AvRr07RHaF5cdFZlOFJ1YmdOT2pUM1VEODM1bE5CRHc#gid=0
Easy to Read Introductory Papers
http://papers.gersteinlab.org/papers/sciam2
http://papers.gersteinlab.org/papers/amsci
Misc
Yale website for ENCODE pilot project: http://encode.gersteinlab.org/