Prosnp
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(→Data from "Consistent negative selection constraints at protein-coding sites across broad evolutionary time-scales" by Khurana et al) |
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==Data from "Consistent negative selection constraints at protein-coding sites across broad evolutionary time-scales" by Khurana et al== | ==Data from "Consistent negative selection constraints at protein-coding sites across broad evolutionary time-scales" by Khurana et al== | ||
| - | Omega (dN/dS) values for all coding sites in Gencodev3b computed from | + | Omega (dN/dS) values for all coding sites in Gencodev3b computed from 12 whole-genome vertebrate alignments using PAML. |
[http://archive.gersteinlab.org/prosnp/all_omega omega values for all codons] | [http://archive.gersteinlab.org/prosnp/all_omega omega values for all codons] | ||
Omega values for sites identified as being under positive selection in humans relative to vertebrates (omega > 1 and probability (omega>1) > 0.5) | Omega values for sites identified as being under positive selection in humans relative to vertebrates (omega > 1 and probability (omega>1) > 0.5) | ||
[http://archive.gersteinlab.org/prosnp/omega_pos_sel Codons under positive selection] | [http://archive.gersteinlab.org/prosnp/omega_pos_sel Codons under positive selection] | ||
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| + | Gap_scores for deletions from 1000 Genomes Pilot 1 data (1KG-DELs) computed from 28 whole-genome vertebrate alignments | ||
| + | [[media:SuppTable3.xlsx|1KG-gap_scores]] | ||
Revision as of 20:28, 3 August 2011
Data from "Consistent negative selection constraints at protein-coding sites across broad evolutionary time-scales" by Khurana et al
Omega (dN/dS) values for all coding sites in Gencodev3b computed from 12 whole-genome vertebrate alignments using PAML. omega values for all codons
Omega values for sites identified as being under positive selection in humans relative to vertebrates (omega > 1 and probability (omega>1) > 0.5) Codons under positive selection
Gap_scores for deletions from 1000 Genomes Pilot 1 data (1KG-DELs) computed from 28 whole-genome vertebrate alignments 1KG-gap_scores
