VAT/dataSets
From GersteinInfo
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| - | ==== | + | ==== 1000 Genomes Project, Phase I, SNP calls ==== |
- Data files: release: 20100804, FTP: ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ | - Data files: release: 20100804, FTP: ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ | ||
Revision as of 18:26, 8 March 2011
Contents |
Data sets
1000 Genomes Project
1000 Genomes Pilot Project: Low coverage samples
- Data files:
- Source: pilot_data, release: 2010_07, FTP: ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/
- Indels
- CEU.low_coverage.2010_07.indel.genotypes.vcf.gz
- JPTCHB.low_coverage.2010_07.indel.genotypes.vcf.gz
- YRI.low_coverage.2010_07.indel.genotypes.vcf.gz
- SNPs
- CEU.low_coverage.2010_07.genotypes.vcf.gz
- CHBJPT.low_coverage.2010_07.genotypes.vcf.gz
- YRI.low_coverage.2010_07.genotypes.vcf.gz
- Annotation file
- GENCODE (version 3b, hg18) using CDS elements where gene_type = protein_coding and transcript_type = protein_coding
- Results
- VAT
1000 Genomes Project, Phase I, SNP calls
- Data files: release: 20100804, FTP: ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ - SNPs - ALL.2of4intersection.20100804.genotypes.vcf.gz - Annotation file - GENCODE (version 3c, hg19) using CDS elements where gene_type = protein_coding and transcript_type = protein_coding - Results - VAT
