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| | | Please refer to the [[Resources]] page. |
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| [http://molmovdb.org/molmovdb/morph Morph Server] generates a plausible pathway between two conformations of a protein or nucleic acid structure. A large number of statistics and several high-quality movies are output.
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| <SMALL>[ <A HREF="/papers/morphs-nar">citation 1</A> | <A
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| HREF="/papers/molmovdb2">citation2</A> |
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| <A HREf="/papers/subject/motions">related</A> ]</SMALL>
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| [http://bioinfo.mbb.yale.edu/ExpressYourself ExpressYourself] is an interactive platform for background correction, normalization, scoring, and quality assessment of raw microarray data.
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| <SMALL>[ <A HREf="/papers/expressyourself">citation</A> ]</SMALL>
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| [http://spine.nesg.org SPINE] is our laboratory-information management system (LIMS) for the [http://www.nesg.org NorthEast Structural Genomics Consortium]. The online version is restricted to consortium users, but most of the code is freely available for download.<br>
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| <SMALL>[ <A HREF="/papers/spine-nar">citation1</A> | <A
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| HREF="/papers/spine2-nar">citation2</A> ]</SMALL>
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| [http://pseudogene.org Pseudogene.org] is a collection of resources related to our efforts to survey eukaryotic genomes for pseudogene sequences, "pseudo-fold" usage, amino-acid composition, and single-nucleotide polymorphisms (SNPs) to help elucidate the relationships between pseudogene families across several | |
| organisms.
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| [http://tiling.gersteinlab.org Tiling] is under construction.
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| [http://networks.gersteinlab.org/genome/interactions/networks/ TopNet] is an automated web tool designed to calculate topological parameters and compare different sub-networks for any given network.
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| A number of programs for calculating properties of protein and nucleic
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| acid structures have been collected into a [http://geometry.molmovdb.org single distribution]. Included are a library of utility functions for dealing
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| with structures, and a convenient interactive command-line interpreter.
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| <SMALL>[ <A HREF="/papers/subject/volumes">related papers</A> ]</SMALL>
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| A new algorithm for [http://bioinfo.mbb.yale.edu/expression/cluster local clustering of expression data] to find timeshifted and/or inverted
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| relationships is available as C source code.
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| <SMALL>[ <A HREF="/papers/timeshift-jmb">citation</A> ]</SMALL>
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| <TR>
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| <TD CLASS="image" VALIGN="middle">
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| <A CLASS="image" HREF="/papers/xml/">
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| <IMG SRC="./images/papers.png" ALT="Papers"></A>
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| </TD>
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| <TD CLASS="description">
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| The <A CLASS="resource" HREF="/papers">publication listings</A> on our
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| site are automatically
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| generated based on data from the NCBI and local annotations stored in XML
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| format. The <A CLASS="resource" HREF="/papers/xml">code</A> which does
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| this is freely available
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| (some modification will be required for other sites).
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| </TD>
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| </TR>
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| </HTML>
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| </TABLE>
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| </TD></TR>
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| </TABLE>
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Please refer to the Resources page.
