Summaries

From GersteinInfo

Latest revision as of 21:54, 4 December 2024

Summaries of different research areas

Gerstein lab experience with developing the LNCTP tool for neurogenomic analysis and prediction uploaded by DC on Dec 4 '24 (g0oslnctp)

Gerstein Lab Experience in programmable salutogenesis uploaded by MH on Nov 25 '24 (g0stc)

Gerstein Lab Experience in Brain Cancer, Germline Mutations, Aging, and Alzheimer's Disease: Investigating Links and Impacts Across Lifespan uploaded by MH on Nov 25 '24 (g0yccteam)

Gerstein Lab Experience in Dissecting the Cellular Origins, Gene Regulatory Network and Intercellular Crosstalk in Glioblastoma Pathogenesis through Single-Cell Genomics uploaded by MH on Nov 25 '24 (g0ycc)

Gerstein Lab Experience in Dissecting the Differentially Expressed Genes, Gene Regulatory Network and Intercellular Crosstalk in Breast Cancer Pathogenesis through Single-Cell Genomics uploaded by MH on Nov 25 '24 (g0lion)

Gerstein Lab Experience in pseudogenes & cancer genomics of splicing uploaded by DC on Nov 9 '24 (g0u6b)

Gerstein lab experience in prioritizing genomic variants in cancer contexts uploaded by DC Sep 15 '24 (g0nrdispycc)

Gerstein lab experience in single-cell analyses for neurogenomics uploaded by DC Aug 26 '24 (g0yscorch)

Gerstein's lab experience in large-scale single-cell analysis and GRNs uploaded by PN Aug 14 '24 (g0uciscorch)

Gerstein's lab experience in working with large consortia and with prioritizing genomic variants uploaded by DC Jul 29 '24 (g0magen)

Gerstein's lab experience in analyzing transcriptome and epigenome datasets to build gene regulatory networks and models for identifying disease variants uploaded by MOR Jul 8 '24 (adx57g3)

Gerstein's lab experience in exRNA research uploaded by SZ Jul 8 '24 (g0exrnanci2)

Gerstein’s lab experience in Center of Excellence in Genomic Science for Multi-Dimensional Perturbomics uploaded by BB on Jul 1 '24 (g0cegs)

Gerstein Lab Experience in Integrative Gene Regulatory Network Construction and Analysis uploaded by XZ on Jun 18 '24 (g0biregnet)

Gerstein Lab Experience in Leveraging AI and Biosensors for Personalized Medicine and Predictive Health Analytics uploaded by XZ on Jun 18 '24 (g0bilnctp)

Gerstein’s lab experience in Multi-modal modeling of cell-specific and time-dynamic features of Alzheimer’s disease uploaded by BB on Jun 18 '24 (vfmod3)

Gerstein Lab Experience in transformer models for genomic datasets uploaded by MJ on Jun 13 '24 (g0pangen2)

Gerstein Lab Experience in single cell brain genomics uploaded by ZC on Jun 10 '24 (g0brf24)

Gerstein Lab Experience in Genomic and Computational Models uploaded by XZ on Jun 3 '24 (x57gbig rppr)

Gerstein Lab Experience in Computational Tools and Databases uploaded by MH on May 23 '24 (g0sysbio)

Gerstein Lab Experience in Interpretable AI Frameworks for Predicting Individual-Level Health and Disease Status from Biosensors uploaded by JL on May 15 '24 (g0sony)

Gerstein Lab Experience in Leveraging Wearable Biosensors to Predict Clinical Health Events in Real Time uploaded by JL on May 15 '24 (g0r01wear)

Gerstein Lab Experience in Time-series Methods for the Analysis of Multimodal Data uploaded by BB on May 14 '24 (g0ddisam)

Gerstein Lab Experience with developing machine learning and analytic approaches to identify variant effects in cancer contexts uploaded by DC on Jan 19 '24 (g0nrdod)

Gerstein Lab Experience in eQTLs, isoQTLs, and allele-specific expression uploaded by DC on Dec 9 '23 (G0hdisam)

Gerstein Lab Experience in personal genome construction uploaded by MJ on Nov 14 '23 (g0pangen)

Gerstein Lab Experience in variants impacts and genomic privacy uploaded by PN on Oct 23 '23 (g0udn)

Gerstein Lab Experience in Interpretable Models for the Alzheimer's disease in the context of aging uploaded by MOR on Sep 21 '23 (g0adexpt)

Gerstein Lab Experience in Biological Networks uploaded by CD on Sep 15 '23 (g0bbnet)

Gerstein Lab Experience in prioritizing genomic variants in cancer contexts uploaded by DC on Aug 14 '23 (nrdisp)

Gerstein Lab Experience in pseudogenes & cancer genomics of splicing uploaded by DC on Feb 25 '23 (g0u6)

Gerstein Lab Experience in mutation-function uploaded by GW on December 19 '22 (g0morphic)

Gerstein Lab Experience in Privacy-Preserving uploaded by XR on December 14 '22 (priara)

Gerstein Lab Experience in Prostate Cancer Research uploaded by SKL on December 13 '22 (g0pcf)

Gerstein Lab Experience in disease omics uploaded by GW on December 13 '22 (g0modacc)

Gerstein Lab Experience in single cell analysis, pseudogenes, allelic analysis, variant prioritization and privacy uploaded by TC on December 8 '22 (g0psygene)

Gerstein Lab Experience in Integrative Models and Consortium Research pt2 uploaded by BB on December 6 '22 (vfmod)

Gerstein Lab Experience in Interpretable Models Integrating Genomics and Epigenomics Features related to Aging uploaded by MOR on December 1 '22 (g0aiel)

Gerstein Lab Experience in Interpretable Deep Learning Models to Characterize Cell-type-specific Variant Impact uploaded by PN on June 5 '22 (adx57g)

Gerstein Lab Experience in Long Tail Variation and Regulatory Genomics in Cancer uploaded by HM on May 18 '22 (dodbrca)

Gerstein Lab Experience in Network Reconstruction, Variant Prioritization in Networks, and Analyzing scATAC-seq & scRNA-seq Data uploaded by DC on Nov 30 '20 (igvf-regnets)

Gerstein Lab Experience in integrating large-scale datasets, allele-specific expression, and deconvolution uploaded by DC on Nov 23 '20 (dgtex)

Gerstein Lab Experience in Allele-Specific Expression Analysis uploaded by AB on Nov 20 '20 (vfmap2)

Gerstein Lab Experience in Noncoding variants and Single-cell analysis uploaded by XL on Nov 16 '20 (gdan)

Gerstein Lab Experience in Integrative Models and Consortium Research uploaded by AB on Nov 12 '20 (vfmod)

Gerstein Lab Experience in Privacy Preserving File Formats focused on Functional Genomics and Gene Network Representations uploaded by GG on Nov 4 '20 (vfdacc)

Gerstein Lab Experience in GENCODE pseudogene uploaded by YY on Oct 2 '20 (gencode)

Gerstein Lab Experience in methylation in sperms uploaded by JX on Sep 29 '20 (cgen02)

Gerstein Lab Experience in improving eQTLs detection uploaded by JX on Sep 29 '20 (jxr03)

Gerstein Lab Experience in viral evolution uploaded by CJC on Sep 14 '20 (virevr01)

Gerstein Lab Accomplishments for CMG3 uploaded by SK on Aug 3 '21 (cmg3)

Gerstein Lab Experience related to SV analysis and priortization uploaded by SK on Aug 3 '21 (jaxceg)

Gerstein Lab Experience with Hi-C data processing, haplotype phasing, and integrating haplotype-specific genomic data uploaded by CJC on March 5 '20 (dis4dn)

Gerstein Lab Experience in Interrelating GTEX and HMP: developing a method for connecting microorganisms to human genes and tissues uploaded by JX on Mar 2 '20 (mbr03)

Gerstein Lab Experience in Identifying QTLs of Various Types and Associating Non-Coding Variants to Functional Activities at Cellular Resolution uploaded by DC on Jan 27 '20 (pdacsup)

Gerstein Lab Experience in RNA-seq & ChIP-Seq Data Analyses, Bulk Tissue Deconvolution, Regulatory Nets, and the PsychENCODE Brain Cell Atlas uploaded by DC on Jan 27 '20 (scorchdc)

Gerstein Lab Experience in Pseudogene Identification and Function Analysis uploaded by KX on Jan 20 '20 (bbsrcpg)

Gerstein Lab Experience in Quantum Computing uploaded by PE on Nov 18 '19 (qcsup)

Gerstein Lab Experience in Data Analysis and Tool Development in the context of Functional Genomic Consortia uploaded by DC on Oct 24 '19 (scorchum1)

Gerstein Lab Experience in Deconvolving Bulk Data to Estimate Cell Fractions, Analyzing Regulatory Nets & Changes, and Predicting Phenotype w/a Deep-Learning Model uploaded by DC on Sept 4 '19 (scbr)

Gerstein Lab Experience with Privacy Preserving File Formats for Functional Genomics Data uploaded by GG on Aug 1 '19 (czioss)

Gerstein Lab Experience with Brain and Cancer Genomics uploaded by MRS on July 23 '19 (sbu01)

Gerstein Lab Experience with Personal Genomes uploaded by TG on April 7 '19 (x57gref/e)

Gerstein Lab Accomplishments for CMG2 uploaded by SK on March 17' 19 (cmg2)

Gerstein Lab Experience in exRNA-seq data uploaded by YY on Feb 20' 19 (x57gchina)

Gerstein Lab Experience in Comparative analysis of 3D genomic data uploaded by JX on Feb 11' 19 (cGen01)

Gerstein Lab Experience in Data funsion and mutation effect on cancer invasiveness uploaded by SKL on January 3' 19 (sbu01)

Gerstein Lab Experience in Single-cell Analysis uploaded by XS on December 19 '18 (czi18)

Gerstein Lab Experience in Integrative Analysis of Multiple Omics Data uploaded by TXL on December 19'18 (dirc)

Gerstein Lab Experience in exRNA-Seq Data Analysis uploaded by BL on December 06 '18 (exrna2)

Gerstein Lab Experience in Genome Privacy uploaded by GG on November 27 '18 (prr01)

Gerstein Lab Experience in Variant Prioritization uploaded by HM on January 31 '18 (sbr01)

Gerstein Lab experience in cross-disciplinary network comparisons uploaded by PM December '17 (Keck18)

Gerstein Lab experience in biological regulatory networks uploaded by PM December '17 (rm1nets)

Gerstein Lab experience in Variant Prioritization on Kidney Cancer uploaded by LS December 6 '17 (candisp)

Gerstein Lab experience in text mining uploaded by XK October 3 '17 (hubspoke)

Gerstein Lab Experience in Retrotransposition uploaded by FN August 29 '17 (pilot-cloud)

Gerstein Lab Experience in Constructing Regulatory Networks uploaded by PE on 7 August '17 (psychdac)

Gerstein Lab Experience in Transcriptome Analysis and Cancer Genomics uploaded by JW on 3 August '17 (cidc)

Gerstein Lab Experience in Noncoding Genome Annotation and Variant Prioritization uploaded by HM on 19 July '17 (tmyale)

Gerstein lab Experience in analyzing the functional impact of structural variants uploaded by FN in July '17 (topmedfr01)

Gerstein Lab Experience in Variant Prioritization with Focus on Cancer uploaded by HM on 9 July '17 (sbu01)

Gerstein lab experience in RNA-seq, ChIP-seq, eQTL and integrative analysis uploaded by SL on 3 May '17 (psychsup3)

Gerstein lab Experience in analyzing the functional impact of structural variants uploaded by FN in May '17 (topmedir01)

Gerstein lab experience in ChIP-seq, eQTL and integrative analysis uploaded by SL on 18 April '17 (Peccolab)

Gerstein lab experience in calling allele-specific variants and GWAS analysis and small (non-coding) RNA analysis uploaded by JR on April '17 (HL2nd)

Gerstein lab experience in calling and prioritizing variants and regions uploaded by LS on Dec '16 (candisp)

Gerstein lab Experience in analyzing the functional impact of transposable elements uploaded by FN on July '16 (te4c)

Gerstein lab Experience in analyzing the functional impact of structural variants uploaded by FN on July '16 (topmed)

Gerstein lab Experience in Computational techniques for the identification of genotypes responsible for diseases uploaded by AH on May '16 (g0gwas)

Gerstein Lab Experience with Pseudogenes uploaded by CSDS on 26 April '16 (u41pg2)

Summary of Previous Gerstein Lab Contributions in ENCODE uploaded by ANS on 26 April '16 (4dac)

Gerstein Lab experience in RNA-Seq and Chip-Seq analysis in brain related projects uploaded by SL on 13 April '16 (psychsup2)

Gerstein Lab experience in RNA-Seq, Chip-Seq, allelic analysis, enhancer analysis and integrative analysis uploaded by SL on 30 March '16 (psychsup)

Gerstein Lab experience in the development of multi-omic processing pipelines and data integration uploaded by DS on 28 March '16 (u24motr)

Gerstein lab Experience in Identification and Functional Characterization of Enhancers uploaded by AH on March 22 '16 (um1fc)

Gerstein Lab Experience in Several Major National Biomedical Data Science Initiatives, including 1KG, ENCODE, Brainspan, psychENCODE, Cancer Genomics, Genome Data Privacy, Proteomics and Networks uploaded by LL on 11 March '16 (nlmtg16)

Gerstein Lab experience in noncoding genome annotation, allelic analysis and somatic variant prioritization uploaded by SKL on 20 January '16 (gtechR01)

Gerstein Lab Experience in calling and prioritizing variants and regions uploaded by LS on 15 December '15 (CanDisp)

Gerstein Lab Experience in ChIP-Seq and RNA-Seq Analysis (brief) as of Dec. 2015 uploaded by MRS on 10 December '15 (4dnbod[take2])

Gerstein Lab Experience in breast cancer genome analysis uploaded by XL on 3 December '15 (SWOG)

Gerstein Lab Experience in Predicting Allosteric Hotspots (mmls) uploaded by DC on 3 December '15

Gerstein Lab experience in RNA-Seq, Chip-Seq and integrative analysis uploaded by SL on 1 December '15 (pec2)

Gerstein Lab experience creating RNAseq processing pipelines uploaded by DS on 1 Dec '15 (u19asth)

Gerstein lab experience in genomic privacy uploaded by AH on Nov 30 '15 (bd2kpr)

Gerstein lab experience in molecular characterisation of gene phenotypes uploaded by CSDS on Nov 24 '15 (bbsrc)

Gerstein lab experience in data science uploaded by KKY on Nov 23 '15

Gerstein lab network related tools uploaded by KKY on Nov 23 '15

Gerstein Lab Structural Variation and Functional Impact (gspac) uploaded by FN on 18 September '15

Gerstein Lab exprience analyzing noncoding genomic variants as of Mar 2015 uploaded by SK on 1 June '15 (ncvarg15)

Gerstein Lab exprience analyzing disease implications of genetic variants as of Mar 2015 uploaded by TG on 1 June '15 (cmg2)

Gerstein Lab experience with Chip-Seq, RNA-Seq, and network analysis as of Feb 2015 uploaded by TG on 1 June '15 (4dnbod)

Gerstein Lab contributions to genome annotation and variation, networks, and comparative genomics uploaded by TG on 16 December '14 (4dnuc)

Gerstein Lab expertise with knowledge-base design and analysis of scientific publications uploaded by TG on 16 December '14 (4dnoh)

Yeast networks and Gerstein Lab expertise uploaded by JC on 13 June '14 (nrt)

Gerstein Lab Cancer Research Accomplishments uploaded by LL on 6 March '14

Gerstein Lab contributions to statistical models of gene expression, network analysis, and mapping variation onto networks up to end of 2013 uploaded by DW on 24 February '14 (dddic)

Annotation related contributions by Gerstein lab up to end of 2013 uploaded by SK on 24 Jan '14 (ncvarg)

Gerstein Lab Contributions to RNA-Seq Analysis up to end of 2013 uploaded by MRS on 2 December '13 (exprofile)

Contributions to Networks & Genomics by Gerstein lab up to end of 2013 uploaded by ANS on 25 November '13 (erggr)

Summary of Gersteinlab Genomics contributions upto 2012 uploaded by DW on 13 March '12 (3dac)

Writeup on large collaborations involving the Gerstein Lab uploaded by mbg on 16 January '11 (3dac)

• Progress on various projects

Genome annotation, data integration, protein structure, sequencing costs, and privacy uploaded by SB on 9 September '12 (keck)

Informatics 2010Q1Q2; Gene Regulatory Networks uploaded by MG on 22 May '10 (cegs)

RNA-Seq, Chip-Seq, Human Variation, Informatics 14apr10mg uploaded by MG on 22 May '10 (cegs)

Encode2 pseudogenes uploaded by YHL on 20 April '10 (encode2pgenes)

Informatics '08-'09; Structural Variation, Regulatory Networks uploaded by mg on 16 April '10 (cegs)

• Internal gsheet listing contributions

• Internal instructions to prepare research summaries