Prosnp
From GersteinInfo
(Difference between revisions)
(→Data from "Consistent negative selection constraints at protein-coding sites across broad evolutionary time-scales" by Khurana et al) |
(→Data from "Consistent negative selection constraints at protein-coding sites across broad evolutionary time-scales" by Khurana et al) |
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Omega (dN/dS) values for all coding sites in Gencodev3b computed from 12 whole-genome vertebrate alignments using PAML. | Omega (dN/dS) values for all coding sites in Gencodev3b computed from 12 whole-genome vertebrate alignments using PAML. | ||
| - | [http://archive.gersteinlab.org/prosnp/all_omega | + | [http://archive.gersteinlab.org/prosnp/all_omega omega_values_for_all_codons] |
Omega values for sites identified as being under positive selection in humans relative to vertebrates (omega > 1 and probability (omega>1) > 0.5) | Omega values for sites identified as being under positive selection in humans relative to vertebrates (omega > 1 and probability (omega>1) > 0.5) | ||
| - | [http://archive.gersteinlab.org/prosnp/omega_pos_sel | + | [http://archive.gersteinlab.org/prosnp/omega_pos_sel Codons_under_positive_selection] |
| - | Allele frequencies of non-synonymous SNPs at sites that are identified as being under positive selection in humans relative to vertebrates and are polymorphic amongst humans in 1000 Genomes Pilot 1 data | + | Allele frequencies of non-synonymous SNPs at sites that are identified as being under positive selection in humans relative to vertebrates and are polymorphic amongst humans |
| + | in 1000 Genomes Pilot 1 data | ||
[[media:SuppTable2.xlsx|Pos_sel_SNP sites]] | [[media:SuppTable2.xlsx|Pos_sel_SNP sites]] | ||
Revision as of 20:34, 3 August 2011
Data from "Consistent negative selection constraints at protein-coding sites across broad evolutionary time-scales" by Khurana et al
Omega (dN/dS) values for all coding sites in Gencodev3b computed from 12 whole-genome vertebrate alignments using PAML. omega_values_for_all_codons
Omega values for sites identified as being under positive selection in humans relative to vertebrates (omega > 1 and probability (omega>1) > 0.5) Codons_under_positive_selection
Allele frequencies of non-synonymous SNPs at sites that are identified as being under positive selection in humans relative to vertebrates and are polymorphic amongst humans in 1000 Genomes Pilot 1 data Pos_sel_SNP sites
Gap_scores for deletions from 1000 Genomes Pilot 1 data (1KG-DELs) computed from 28 whole-genome vertebrate alignments 1KG-gap_scores
