VAT/download

From GersteinInfo

VAT Main Page

Contents 1 Code 1.1 Required Software - External 1.2 Download 1.2.1 Source code 1.2.2 Executables 1.2.3 License information 2 Installation

Code

Required Software - External

1. GSL - GNU Scientific Library
2. BlatSuite - BLAT and a collection of utility programs. Note: these executables must be part of the PATH.
3. GD library - The GD library is used to create an image for each gene model and its associated variants.
4. Tabix - Tabix is generic tool that indexes position-sorted files in tab-delimited formats to facilitate fast retrieval (download). Note: these executables must be part of the PATH
5. VCF tools - VCF tools consists of a suite of useful modules to manipulate VCF files.

Download

Important Note
==============

THIS PACKAGE (VAT) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES
OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.

Source code

A TAR ball containing the source code can be downloaded here:

• VAT-0.5.tar.gz - Initial upload

Executables

Statically built binaries for UNIX can be found here:

• VAT-0.5-UNIX.tar.gz - 64bit version

License information

The software package is released under the Creative Commons license (Attribution-NonCommerical).
For more details please refer to the Permissions Page on the Gerstein Lab webpage.

Installation