From GersteinInfo

Contents 1 Gerstein Lab publications for ENCODE 3 rollout 1.1 Core Papers 1.2 Related Papers 1.3 Lectures & Images 1.4 Figures

Gerstein Lab publications for ENCODE 3 rollout

• Summary http://papers.gersteinlab.org/subject/encode3rollout/index.html

Core Papers

• Perspectives on ENCODE (https://doi.org/10.1038/s41586-020-2449-8)
• Encyclopedia Marker Paper TBD
• ENCODEC http://papers.gersteinlab.org/papers/encodec/index.html
• RADAR http://papers.gersteinlab.org/papers/radar/index.html
• MatchFilter http://papers.gersteinlab.org/papers/matchfilter/index.html
• Mouse Pseudogene http://papers.gersteinlab.org/papers/mspgenes/index.html

Related Papers

• ESPRNN http://papers.gersteinlab.org/papers/esprnn/index.html
• DINER http://papers.gersteinlab.org/papers/diner/index.html
• TopicNet http://papers.gersteinlab.org/papers/tfmem/index.html

Lectures & Images

http://lectures.gersteinlab.org/summary/Annotation-Variants-Dysregulation-Cancer--20190614-i0lon19+bern/

Figures

• Figures on ENCODE3 rollout (Google Slide)
• ENCODEC Figure Evolution (YouTube link) (Source video in mp4)