FusionSeq List of programs

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geneFusions

geneFusions identifies potential fusion transcript candidates from an alignment file.

Usage:

geneFusions prefix minNumberOfReads 

• Inputs: Takes an MRF file from STDIN
• Outputs: Reports GFR to STDOUT
• Required arguments
  • prefix - the main ID of each candidate, i.e. prefix_0001, prefix_0002, etc.
  • minNumberOfReads - the minimum number of reads required to include a candiate
• Optional arguments
  • none

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