Encode-enhancers
From GersteinInfo
This page lists the ENCODE 2 enhancers
Original Data Files
These files are derived from data at http://www.ebi.ac.uk/~swilder/Superclustering/concordances4 (described in papers: Hoffman et al, NAR, 2013; Hoffman et al, Nature Methods, 2013; and Ernst and Kellis, Nature Methods, 2012) and http://papers.gersteinlab.org/papers/metatrack (described in Yip et al, Genome Biol, 2012))
DRM_Gm12878_merged.bed - Closely derived from the original file
Unions and Insections
DRM_union_merged.bed: Union of DRM bins merged into regions, allowing gaps of 1 bin in size
ENHANCER_CHROMHMM_SEGWAY_DRM.intersect.bed: ChromHMM/Segway enhancers that intersect with DRMs
ENHANCER_CHROMHMM_SEGWAY_DRM.union.bed: Union of all enhancers
chromhmm.segway.all_celllines.enhancer.sorted.bed
chromhmm_segway.gm12878.enhancer.bed
chromhmm_segway.h1hesc.enhancer.bed
chromhmm_segway.helas3.enhancer.bed
chromhmm_segway.hepg2.enhancer.bed
