Encode-enhancers

From GersteinInfo

This page lists the ENCODE 2 enhancers

Original Data Files

These files are derived from data at http://www.ebi.ac.uk/~swilder/Superclustering/concordances4 (described in papers: X, Y, Z) and http://papers.gersteinlab.org/papers/metatrack (described in this paper)

DRM_Gm12878_merged.bed - Closely derived from the original file

DRM_H1hesc_merged.bed

DRM_Helas3_merged.bed

DRM_Hepg2_merged.bed

DRM_K562_merged.bed

Unions and Insections

DRM_union_merged.bed: Union of DRM bins merged into regions, allowing gaps of 1 bin in size

ENHANCER_CHROMHMM_SEGWAY_DRM.intersect.bed: ChromHMM/Segway enhancers that intersect with DRMs

ENHANCER_CHROMHMM_SEGWAY_DRM.union.bed: Union of all enhancers

chromhmm.segway.all_celllines.enhancer.sorted.bed

chromhmm_segway.gm12878.enhancer.bed

chromhmm_segway.h1hesc.enhancer.bed

chromhmm_segway.helas3.enhancer.bed

chromhmm_segway.hepg2.enhancer.bed

chromhmm_segway.huvec.enhancer.bed

chromhmm_segway.k562.enhancer.bed