FusionSeq Papers

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Here is a list of papers citing:

  • Sboner A, Habegger L, Pflueger D, Terry S, Chen DZ, Rozowsky JS, Tewari AK, Kitabayashi N, Moss BJ, Chee MS, Demichelis F, Rubin MA, Gerstein MB. FusionSeq: a modular framework for finding gene fusions by analyzing Paired-End RNA-Sequencing data. Genome Biol 21 Oct. 2010; 11:R104 doi:10.1186/gb-2010-11-10-r104


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Scientific Papers

2011

  • McPherson, Andrew, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab Shah, Colin Collins, and S. Cenk Sahinalp. Comrad: a novel algorithmic framework for the integrated analysis of RNA-Seq and WGSS data. Bioinformatics (April 9, 2011).
  • Nacu, Serban, Wenlin Yuan, Zhengyan Kan, Deepali Bhatt, Celina Rivers, Jeremy Stinson, Brock Peters, et al. Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples. BMC Medical Genomics 4, no. 1 (2011): 11.
  • Pflueger D, Terry S, Sboner A, Habegger L, Esgueva R, Lin P, Svensson MA, Kitabayashi N, Moss BJ, MacDonald TY, Cao X, Barrette T, Tewari AK, Chee MS, Chinnaiyan AM, Rickman DS, Demichelis F, Gerstein MB, Rubin MA. Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing Genome Res 2011; Vol. 21:56-67; Published in Advance October 29, 2010. doi:10.1101/gr.110684.110
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