User contributions
From GersteinInfo
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- 14:04, 10 June 2010 (hist) (diff) N Encode Information Page (Redirected page to Encode Information) (top)
- 14:02, 10 June 2010 (hist) (diff) N DeadLines (Created page with '= Deadlines on Different Encode Projects = == Calendar == Deadlines are placed in [http://www.google.com/calendar/hosted/gersteinlab.org/embed?src=gersteinlab.org_cf9nqr5n2q0q7bp…') (top)
- 14:02, 10 June 2010 (hist) (diff) N File:Expressed HumanTFs Summary.xls (top)
- 14:00, 10 June 2010 (hist) (diff) N Encode Information (Created page with '==Encode Resources== * [http://encode.gersteinlab.org Yale ENCODE site] * [http://wiki.gersteinlab.org/encode/index.php/Main_Page Lab ENCODE information] * [http://www.genome.gov…') (top)
- 13:59, 10 June 2010 (hist) (diff) N FusionSeq (Created page with '=Introduction= This page provides the source code for FusionSeq. Please note that these tools were tested on a multi-node cluster of computing nodes with Linux Red Hat as operati…')
- 13:58, 10 June 2010 (hist) (diff) N Genome Statistics (Created page with '* From ENCODE paper These 30Mb are divided among 44 genomic regions; approximately 15Mb reside in 14 regions for which there is already substantial biological knowledge, whereas…') (top)
- 13:57, 10 June 2010 (hist) (diff) N Genome Technology Subgroup (Redirected page to Genome Technology) (top)
- 13:55, 10 June 2010 (hist) (diff) N Genome Technology (Created page with '== Recent Publications == ;'''Integrating sequencing technologies in personal genomics - optimal low cost reconstruction of structural variants.''' :J Du, RD Bjornson, ZD Zhang,…') (top)
- 13:39, 10 June 2010 (hist) (diff) N Human TF List (Created page with ''''Here is the [http://homes.gersteinlab.org/people/nbhardwaj/Human_TFs_with_Intensity.xls list] with various gene names mapped.''' '''Citation:''' Bhardwaj, N., Carson, M. B., …') (top)
- 13:36, 10 June 2010 (hist) (diff) N File:Lunter-indel-genic.png (top)
- 13:35, 10 June 2010 (hist) (diff) N LOF (Created page with '== 1000 Genomes Project indel LOF == === Lunter indels === * Combined indels from low-coverage individuals * Currently 3,853,785 indels = 2,263,850 deletions + 1,589,935 insertio…') (top)
- 13:34, 10 June 2010 (hist) (diff) N Local-copy-cs445 (Created page with 'This page contains general information for the class: ''CPSC445/CPSC545/MBB334/MBB545/CBB545'' Spring 2008 '''Introduction to Data Mining''' == Course websites == * Course wi…') (top)
- 13:31, 10 June 2010 (hist) (diff) MB&B Policy for Graduate Students on Vacation and Travel (top)
- 13:29, 10 June 2010 (hist) (diff) N File:Mark.jpg (top)
- 13:29, 10 June 2010 (hist) (diff) N File:Mbg-name.Greek-Russian.jpg (top)
- 13:28, 10 June 2010 (hist) (diff) N Mark Alphabets (Created page with 'Mark Gerstein in multiple alphabets. ===υαρκοσ γερστειν=== 400px 400px') (top)
- 13:24, 10 June 2010 (hist) (diff) N Paper Byte letter (Created page with '==Other Paper's : Letter in Byte == M Gerstein (1996). "Porting Unix," letter to Byte (August issue of magazine). I use Unix extensively in a scientific research environment, …') (top)
- 13:21, 10 June 2010 (hist) (diff) N Pseudogene Statistics (Created page with '{| border="1" |- ! Organism ! Pseudogenes ! Duplicated ! Processed ! Notes |- | Human | 16,326 | 2,585 | 7,913 |- | Arabidopsis | 4,260 | 1,144 | 704 |- | Chicken | 4,179 | 2,655…') (top)
- 13:18, 10 June 2010 (hist) (diff) N File:TranscriptCoverage.jpg (top)
- 13:18, 10 June 2010 (hist) (diff) N File:SummaryStatistics.jpg (top)
- 13:18, 10 June 2010 (hist) (diff) N File:GenomicRegion.jpg (top)
- 13:17, 10 June 2010 (hist) (diff) N RSEQtools/gallery (Created page with '<center>[http://archive.gersteinlab.org/proj/rnaseq/rseqtools '''RSEQtools Main Page''']</center> __TOC__ == Results Gallery == <center>Top</center> === Visualization…') (top)
- 13:14, 10 June 2010 (hist) (diff) N File:GersteinLab-Resources-21Oct08.doc (top)
- 13:14, 10 June 2010 (hist) (diff) N File:GersteinLab-Resources-1Sep07.doc (top)
- 13:06, 10 June 2010 (hist) (diff) N File:Gene complexity.jpeg (top)
- 13:05, 10 June 2010 (hist) (diff) N What is a gene? (Created page with '''``The gene is a union of genomic sequences encoding a coherent set of potentially overlapping functional products."'' ''from'': <br> '''What is a gene, post-ENCODE? History an…') (top)
- 12:36, 9 June 2010 (hist) (diff) N File:Tree.png (top)
- 12:35, 9 June 2010 (hist) (diff) N File:Saturation2.jpg (top)
- 12:35, 9 June 2010 (hist) (diff) N File:Saturation.png (top)
- 12:35, 9 June 2010 (hist) (diff) N File:Output.png (top)
- 12:35, 9 June 2010 (hist) (diff) N File:Image006.gif (top)
- 12:35, 9 June 2010 (hist) (diff) N File:Image004.gif (top)
- 12:34, 9 June 2010 (hist) (diff) N File:Heatmap.png (top)
- 12:34, 9 June 2010 (hist) (diff) N File:GSA.png (top)
- 12:34, 9 June 2010 (hist) (diff) N File:GSA results.png (top)
- 12:34, 9 June 2010 (hist) (diff) N File:Errorbar.png (top)
- 12:34, 9 June 2010 (hist) (diff) N File:Bigdendogram.png (top)
- 12:33, 9 June 2010 (hist) (diff) N File:Agg.jpg (top)
- 12:33, 9 June 2010 (hist) (diff) N File:Agg Baf155 exp.jpg (top)
- 12:33, 9 June 2010 (hist) (diff) N File:Act-5000bp-1.jpg (top)
- 12:31, 9 June 2010 (hist) (diff) N File:Act-2500bp-1.jpg (top)
- 12:31, 9 June 2010 (hist) (diff) N File:ACT results.png (top)
- 12:05, 9 June 2010 (hist) (diff) N ActGallery (Created page with '==Aggregation== The standard output for the aggregation script is a three column file corresponding to nucleotide position, bin number, and average signal (or a two column file c…')
- 12:01, 9 June 2010 (hist) (diff) N ACT (Created page with '=== ACT === http://ACT.Gersteinlab.org was developed by Robert Bjornson <robert.bjornson@yale.edu>, Joel Rozowsky, Justin Jee, and others at the Gerstein Lab at Yale. This code …') (top)
- 12:00, 9 June 2010 (hist) (diff) N 1000genomes nonsyn (Created page with '[http://homes.gersteinlab.org/people/suganthi/outbox/1000genomes/REL-0908/all_LOF/nsyn/CEU.0908.all.pc.nsyn CEU.0908.nsyn] Summary of file The pipeline software to map SNPs on…') (top)
- 11:57, 9 June 2010 (hist) (diff) N RSEQtools/workflow (Created page with '<center>[http://archive.gersteinlab.org/proj/rnaseq/rseqtools '''RSEQtools Main Page''']</center> __TOC__ == Example workflow == This section shows a simple workflow for proce…')
- 11:56, 9 June 2010 (hist) (diff) N RSEQtools (Created page with '<center>[http://archive.gersteinlab.org/proj/rnaseq/rseqtools '''RSEQtools Main Page''']</center> __TOC__ == Introduction == The mapped read format (MRF) is a concise represe…')
- 11:49, 9 June 2010 (hist) (diff) N Null Page (Created page with '==Stuff is coming!== This is a null page!') (top)
- 11:48, 9 June 2010 (hist) (diff) N Old lectures and courses (Created page with '* Older lectures http://lectures.gersteinlab.org/old_lectures.html * Older Courses http://lectures.gersteinlab.org/old_courses.html * Updating the lectures page [http://lec…')
- 11:48, 9 June 2010 (hist) (diff) N Some Useful Email Addresses (Created page with '* For submitting data to the public data banks, use: datasubmission (AT) gersteinlab (DOT) org') (top)
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