PEC package preprints

From GersteinInfo

This is the page gives an overview of the Yale contribution to Dec. '18 PsychENCODE rollout. (This is a "private page" to those who have the link.)

Contents 1 PsychENCODE introduction 2 Capstone papers from Yale 3 Other Yale papers 4 Listing of all the Papers in Science

PsychENCODE introduction

• Draft of introduction as of 28-Nov.

Capstone papers from Yale

• Developmental Capstone - Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk
  • Development.psychencode.org
• Adult Capstone - Comprehensive functional genomic resource and integrative model for the human brain
  • Main text: Proofs, Figures
  • One page summary: Proofs, Text, Figure
  • Fun pics of cell-type specfic regulatory networks, based on single-cell data (Big JPEG Wheel) (PDF blow-ups)
  • Resource.psychencode.org

Other Yale papers

• Transcriptome and epigenome landscape of human cortical development modeled in brain organoids
  • One page summary
• Spatiotemporal transcriptomic divergence across human and macaque brain development
  • Evolution.psychencode.org

Listing of all the Papers in Science

• Capstones

1. Li et al, aat7615, Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk.
2. Gandal et al, aat8127, Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder
3. Wang et al, aat8464, Comprehensive functional genomic resource and integrative model for the human brain.

• Other Papers

1. Zhu et al, aat8077, Spatiotemporal transcriptomic divergence across human and macaque brain development.
2. Amiri et al, aat6720, Transcriptome and epigenome landscape of human cortical development modeled in brain organoids.
3. Rajarajan et al, aat4311, Neuron-specific Signatures in the Chromosomal Connectome Associated with Schizophrenia Risk.
4. An et al, aat6576, Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder.