RSEQtools/code

From GersteinInfo

RSEQtools Main Page

Code

Required Software - External

1. GSL - GNU Scientific Library
2. BlatSuite - BLAT and a collection of utility programs. Note these executables have to be part of the PATH.

Download

RSEQtools consists of two libraries: BIOS, which is a general C library, and MRF (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets.

A TAR ball that contains these two components can be downloaded HERE.

Also, the source code can also be obtained from SourceForge.net.

Installation

The components should be installed in the same order as listed above. Installation instructions can be found at the respective website.

Important Note
==============

THIS PACKAGE (RSEQtools including BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES
OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.

License information

The software package is released under the Creative Commons license (Attribution-NonCommerical).
For more details please refer to the Permissions Page on the Gerstein Lab webpage.