From GersteinInfo

Contents 1 APE Class Diagrams 1.1 APE-analyze 1.2 APE-compare 1.3 Annotation Library

APE Class Diagrams

Unified Modeling Language is a standard language to document class architecture for object-oriented programs. The class diagrams for APE and related libraries can be found below.

APE-analyze

APE-analyze Main Driver

APE-compare

APE-compare Main Driver

Annotation Library

Genomic Features

Genomic Subfeatures

Comparators

Enumerated Types

File Readers and Data Analysis

Classes for Encapsulating Scores